bcftools-variant-manipulation
From the author
CLI for VCF/BCF: filter, merge, annotate, query, normalize, compute stats. Core post-variant-calling: quality filtering, multi-sample merging, rsID annotation, genotype extraction. Samtools companion in HTSlib. Use GATK for complex indel realignment during calling; use VCFtools for population genetics stats.
Install
npx skills add jaechang-hits/SciAgent-Skills --skill bcftools-variant-manipulation -a claude-code
Installs to .claude/skills/bcftools-variant-manipulation/ · Each command fetches the skill straight from GitHub with the open skills CLI.
Byte-identical to the scanned commit, with the repository’s licence and a SOURCE.txt.
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