pysam-genomic-files
From the author
Read/write SAM/BAM/CRAM, VCF/BCF, FASTA/FASTQ. Region queries, pileup, variant filtering, read groups. Python htslib wrapper exposing samtools/bcftools CLI. Use STAR/BWA for alignment; GATK/DeepVariant for variant calling.
Install
npx skills add jaechang-hits/SciAgent-Skills --skill pysam-genomic-files -a claude-code
Installs to .claude/skills/pysam-genomic-files/ · Each command fetches the skill straight from GitHub with the open skills CLI.
Byte-identical to the scanned commit, with the repository’s licence and a SOURCE.txt.
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