seq-wrangler
From the author
Sequence QC, alignment, and BAM processing. Wraps FastQC, BWA/Bowtie2, SAMtools for automated read-to-BAM pipelines.
Install
npx skills add aAAaqwq/AGI-Super-Team --skill seq-wrangler -a claude-code
Installs to .claude/skills/seq-wrangler/ · Each command fetches the skill straight from GitHub with the open skills CLI.
Download .zip
Byte-identical to the scanned commit, with the repository’s licence and a SOURCE.txt.
Want your agent to suggest skills while you type? See how to use skills from your IDE.
Safety checks on SKILL.md
No warnings.
Why 83
Security100
Provenance65
Maintenance100
Licence100
Adoption35
aiqbench computes the trust score from public signals. It is not a security audit, so read a skill before you install it.
Similar skills
Closest to this one by what they do and when they are used.
- samtools-bam-processingjaechang-hits/SciAgent-SkillsCLI toolkit for SAM/BAM/CRAM: sort, index, convert, filter, QC alignments. Core commands: view, sort, index, flagstat, stats, depth, markdup, merge. Required between alignment and variant/peak calling. Use pysam for Python-native BAM access; deeptools for normalized coverage tracks.Engineering★ 383
- pysamBioTender-max/awesome-bio-agent-skillsGenomic file toolkit. Read/write SAM/BAM/CRAM alignments, VCF/BCF variants, FASTA/FASTQ sequences, extract regions, calculate coverage, for NGS data processing pipelines.Science★ 206
- pysam-genomic-filesjaechang-hits/SciAgent-SkillsRead/write SAM/BAM/CRAM, VCF/BCF, FASTA/FASTQ. Region queries, pileup, variant filtering, read groups. Python htslib wrapper exposing samtools/bcftools CLI. Use STAR/BWA for alignment; GATK/DeepVariant for variant calling.Science★ 383
- bwa-mem2-dna-alignerjaechang-hits/SciAgent-SkillsFast short-read DNA aligner for WGS/WES/ChIP-seq. 2× faster BWA-MEM successor; outputs SAM/BAM with read group headers for GATK. Primary plus supplementary records for chimeric reads. Use STAR for RNA-seq splice-aware alignment; Bowtie2 is a comparable alternative.Other★ 383
- ngs-quality-controlawslabs/hcls-agent-skillsNGS quality control pipeline for short-read sequencing data. Triggers on FastQC, QC, quality control, adapter trimming, coverage, mosdepth, Picard metrics, fastp, MultiQC, sequencing QC, BAM QC, WGS/WES coverage analysis.Other★ 66
- deeptoolsK-Dense-AI/scientific-agent-skillsNGS analysis toolkit. BAM to bigWig conversion, QC (correlation, PCA, fingerprints), heatmaps/profiles (TSS, peaks), for ChIP-seq, RNA-seq, ATAC-seq visualization.Marketing★ 54.5K
Ratings & reviews
—
no reviews
Tried this skill? Rate it to help others. Sign in
Discussion
Join the discussion. Sign in