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NGS quality control pipeline for short-read sequencing data. Triggers on FastQC, QC, quality control, adapter trimming, coverage, mosdepth, Picard metrics, fastp, MultiQC, sequencing QC, BAM QC, WGS/WES coverage analysis.

Install

npx skills add awslabs/hcls-agent-skills --skill ngs-quality-control -a claude-code

Installs to .claude/skills/ngs-quality-control/ · Each command fetches the skill straight from GitHub with the open skills CLI.

Download .zip

Byte-identical to the scanned commit, with the repository’s licence and a SOURCE.txt.

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Why 76

Security85
Provenance62
Maintenance100
Licence100
Adoption32

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