bio-atac-seq-atac-qc
From the author
ATAC-seq library quality control -- TSS enrichment, FRiP, fragment-size periodicity, library complexity (NRF/PBC1/PBC2), mitochondrial fraction, and ENCODE 4 thresholds. Use when assessing whether an ATAC-seq library passes ENCODE acceptance criteria, diagnosing transposition artefacts, comparing Omni-ATAC vs standard prep quality, or selecting which replicates to drop before peak calling.
Install
npx skills add BioTender-max/awesome-bio-agent-skills --skill bio-atac-seq-atac-qc -a claude-code
Installs to .claude/skills/bio-atac-seq-atac-qc/ · Each command fetches the skill straight from GitHub with the open skills CLI.
No download: this skill’s licence (Custom or unclear) does not let us redistribute its files. The install commands fetch them from GitHub instead.
Want your agent to suggest skills while you type? See how to use skills from your IDE.
Safety checks on SKILL.md
No warnings.
Why 74
aiqbench computes the trust score from public signals. It is not a security audit, so read a skill before you install it.
Similar skills
Closest to this one by what they do and when they are used.
- atac-seqBioTender-max/awesome-bio-agent-skillsATAC-seq processing with assay QC, MACS3 peak calling, consensus peak matrices, differential accessibility, and motif or footprint follow-up.Other★ 215
- encode-databasejaechang-hits/SciAgent-SkillsENCODE Portal REST API for regulatory genomics: TF ChIP-seq, ATAC-seq/DNase-seq peaks, histone marks, and RNA-seq across 1000+ cell types. Search experiments by assay/biosample/target; download BED/bigWig; retrieve SCREEN cCREs by region or gene. Use to annotate variants with regulatory tracks, find open chromatin in a cell type, or fetch peak files for ChIP/ATAC analysis. For regulatory variant scoring use regulomedb-database; for GWAS associations use gwas-database.Data★ 385
- mainframe-security-assessment26zl/cybersec-toolkitUse for mainframe, z/OS, RACF, ACF2, Top Secret, CICS, IMS, DB2, JCL, JES, APF libraries, USS, TN3270, privileged dataset, and legacy enterprise security assessment work.Security★ 87
- protein-qcBioTender-max/awesome-bio-agent-skillsQuality control metrics and filtering thresholds for protein design. Use this skill when: (1) Evaluating design quality for binding, expression, or structure, (2) Setting filtering thresholds for pLDDT, ipTM, PAE, (3) Checking sequence liabilities (cysteines, deamidation, polybasic clusters), (4) Creating multi-stage filtering pipelines, (5) Computing PyRosetta interface metrics (dG, SC, dSASA), (6) Checking biophysical properties (instability, GRAVY, pI), (7) Ranking designs with composite scoring. This skill provides research-backed thresholds from binder design competitions and published benchmarks.Science★ 215
- ngs-quality-controlawslabs/hcls-agent-skillsNGS quality control pipeline for short-read sequencing data. Triggers on FastQC, QC, quality control, adapter trimming, coverage, mosdepth, Picard metrics, fastp, MultiQC, sequencing QC, BAM QC, WGS/WES coverage analysis.Other★ 72
- retrieval-integrity-assessmentzero-lab-ai/skillsAssesses whether an authorized retrieval-augmented AI system preserves source, index, retrieval, context, and output integrity. Use when testing RAG poisoning, retrieval hijacking, context saturation, semantic substitution, or citation controls with benign canaries.Testing★ 195
Ratings & reviews
—
no reviews
Tried this skill? Rate it to help others. Sign in
Discussion
Join the discussion. Sign in