encode-database
From the author
ENCODE Portal REST API for regulatory genomics: TF ChIP-seq, ATAC-seq/DNase-seq peaks, histone marks, and RNA-seq across 1000+ cell types. Search experiments by assay/biosample/target; download BED/bigWig; retrieve SCREEN cCREs by region or gene. Use to annotate variants with regulatory tracks, find open chromatin in a cell type, or fetch peak files for ChIP/ATAC analysis. For regulatory variant scoring use regulomedb-database; for GWAS associations use gwas-database.
Install
npx skills add jaechang-hits/SciAgent-Skills --skill encode-database -a claude-code
Installs to .claude/skills/encode-database/ · Each command fetches the skill straight from GitHub with the open skills CLI.
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