popv-cell-annotation
From the author
Consensus cell type annotation: runs 10+ algorithms (KNN-Harmony/BBKNN/Scanorama/scVI, CellTypist, ONCLASS, Random Forest, SCANVI, SVM, XGBoost) on a labeled reference and transfers labels via majority voting. Outputs per-method labels, consensus, agreement score. Use when single-method annotation is insufficient or you need ensemble uncertainty for novel states; to choose between manual markers, CellTypist and popV, read cell-type-annotation first.
Install
npx skills add jaechang-hits/SciAgent-Skills --skill popv-cell-annotation -a claude-code
Installs to .claude/skills/popv-cell-annotation/ · Each command fetches the skill straight from GitHub with the open skills CLI.
Byte-identical to the scanned commit, with the repository’s licence and a SOURCE.txt.
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