celltypist-cell-annotation
From the author
Automated scRNA-seq cell type annotation via pre-trained logistic regression. 45+ models: immune, gut, lung, brain, fetal, cancer microenvironments. Input normalized AnnData; outputs per-cell labels, majority-vote cluster labels, confidence scores. Use for fast, reference-backed annotation without manual marker inspection; read cell-type-annotation first.
Install
npx skills add jaechang-hits/SciAgent-Skills --skill celltypist-cell-annotation -a claude-code
Installs to .claude/skills/celltypist-cell-annotation/ · Each command fetches the skill straight from GitHub with the open skills CLI.
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