salmon-rna-quantification
From the author
Ultra-fast RNA-seq transcript/gene quantification via quasi-mapping (no BAM). Builds a k-mer index from transcriptome FASTA, quantifies in minutes. Outputs TPM/count tables (quant.sf) with optional GC- and sequence-bias correction. Integrates with tximeta/tximport for DESeq2/edgeR. Use STAR when a genome-aligned BAM is needed.
Install
npx skills add jaechang-hits/SciAgent-Skills --skill salmon-rna-quantification -a claude-code
Installs to .claude/skills/salmon-rna-quantification/ · Each command fetches the skill straight from GitHub with the open skills CLI.
No download: this skill’s licence (GPL-3.0) does not let us redistribute its files. The install commands fetch them from GitHub instead.
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