single-cell-annotation
From the author
Best practices for single-cell RNA-seq cell type annotation including marker-based, reference-based, and automated classification approaches.
Install
npx skills add jaechang-hits/SciAgent-Skills --skill single-cell-annotation -a claude-code
Installs to .claude/skills/single-cell-annotation/ · Each command fetches the skill straight from GitHub with the open skills CLI.
No download: this skill’s licence (Custom or unclear) does not let us redistribute its files. The install commands fetch them from GitHub instead.
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- scgptaipoch/open-scienceEmbed and annotate single-cell expression data with scGPT, a foundation model for single-cell biology. Use this skill when: (1) Producing cell embeddings from an AnnData for clustering/integration, (2) Zero-shot or fine-tuned cell-type annotation, (3) Gene-level representation for perturbation/GRN tasks. For probabilistic single-cell models (scVI etc.), use the scvi-tools library.Science★ 5.4K
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