From the author
Performs RNA velocity analysis with scVelo on single-cell RNA-seq AnnData objects that have spliced and unspliced layers (from velocyto, STARsolo, kallisto|bustools, or alevin-fry). Covers stochastic and dynamical velocity models, velocity graphs and embedding arrows, latent time, PAGA trajectory graphs, and driver gene ranking. Use when inferring differentiation direction from snapshot data, estimating latent time from splicing kinetics, finding driver genes of a trajectory, or adding velocity arrows to a Scanpy UMAP. Not for fate probability modeling (use CellRank) or datasets without unspliced counts.
Install
npx skills add KalarisLabs/research-agent-skills --skill scvelo -a claude-code
Installs to .claude/skills/scvelo/ · Each command fetches the skill straight from GitHub with the open skills CLI.
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