trajectory-analysis
From the author
Single-cell trajectory inference pipeline covering diffusion pseudotime (DPT), PAGA, RNA velocity with scVelo, and fate mapping with CellRank. Use when the user mentions pseudotime, trajectory, lineage, differentiation, RNA velocity, scVelo, CellRank, PAGA, diffusion map, fate probabilities, terminal states, spliced/unspliced, velocyto, order cells by development, cell differentiation path, cell fate, branching analysis, monocle, developmental trajectory, stem cell differentiation, progenitor to mature, how do cells differentiate, cell lineage tree, velocity arrows, fate mapping, transition probabilities, root cells, terminal states, absorption probabilities, or latent time.
Install
npx skills add awslabs/hcls-agent-skills --skill trajectory-analysis -a claude-code
Installs to .claude/skills/trajectory-analysis/ · Each command fetches the skill straight from GitHub with the open skills CLI.
Byte-identical to the scanned commit, with the repository’s licence and a SOURCE.txt.
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Similar skills
Closest to this one by what they do and when they are used.
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