rnaseq-de
From the author
Differential expression analysis for bulk RNA-seq and pseudo-bulk count matrices with QC, PCA, and contrast testing.
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npx skills add ComeOnOliver/skillshub --skill rnaseq-de -a claude-code
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- alterlab-pydeseq2AlterLab-IEU/AlterLab-Academic-SkillsRun differential gene expression analysis on bulk RNA-seq count matrices with PyDESeq2, the Python port of DESeq2 — size-factor normalization, dispersion estimation, Wald tests, FDR (Benjamini-Hochberg) correction, and volcano/MA plots. Use when identifying differentially expressed genes between conditions from raw bulk RNA-seq counts. Part of the AlterLab Academic Skills suite.Testing★ 84
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