homer-motif-analysis
From the author
De novo and known TF motif enrichment in ChIP-seq/ATAC-seq peaks via HOMER. findMotifsGenome.pl finds over-represented patterns vs background; annotatePeaks.pl assigns context (TSS distance, gene, repeat). Use after MACS3 to identify enriched TFs, annotate peaks with nearest genes, and validate ChIP-seq via the target motif.
Install
npx skills add jaechang-hits/SciAgent-Skills --skill homer-motif-analysis -a claude-code
Installs to .claude/skills/homer-motif-analysis/ · Each command fetches the skill straight from GitHub with the open skills CLI.
No download: this skill’s licence (GPL-3.0) does not let us redistribute its files. The install commands fetch them from GitHub instead.
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