aiqbench analysis
This research introduces a latent-to-latent flow technique for stochastic segmentation of medical volumes, directly addressing uncertainty in inter-observer variability for radiotherapy planning. By operating on encoded representations rather than full resolution data, the method achieves up to 14x efficiency gains while maintaining clinically relevant performance. The work represents a significant advancement in applying generative modeling frameworks like flow matching to complex volumetric AI tasks.
Latent-to-Latent Flow for Volumetric Stochastic Segmentation
arXiv:2609.07460v1 Announce Type: cross Abstract: Uncertainty arising from inter-observer variability in medical image segmentation plays an important role in developing treatment plans. Research in this area is inhibited by the lack of multiple annotations for large-scale medical datasets, especially for volumetric data, which suffers from additional scaling and computational complexity challenges. Flow matching has emerged as a powerful framework for generative modelling and has also been demonstrated to maintain strong performance when working with latent representations of images. In this work, we introduce a latent-to-latent flow technique for stochastic segmentation of medical volumes via encoded representations of both the image and label space. We evaluate our method on two challenging applications covering delineation uncertainty for radiotherapy planning and multiple organ structure segmentation, improving efficiency up to 14x compared with full resolution models while maintaining clinically relevant performance.
Abstract:Uncertainty arising from inter-observer variability in medical image segmentation plays an important role in developing treatment plans. Research in this area is inhibited by the lack of multiple annotations for large-scale medical datasets, especially for volumetric data, which suffers from additional scaling and computational complexity challenges. Flow matching has emerged as a powerful framework for generative modelling and has also been demonstrated to maintain strong performance when working with latent representations of images. In this work, we introduce a latent-to-latent flow technique for stochastic segmentation of medical volumes via encoded representations of both the image and label space. We evaluate our method on two challenging applications covering delineation uncertainty for radiotherapy planning and multiple organ structure segmentation, improving efficiency up to 14x compared with full resolution models while maintaining clinically relevant performance.
Computer Vision and Pattern Recognition (cs.CV); Artificial Intelligence (cs.AI); Machine Learning (cs.LG)
arXiv:2609.07460 [cs.CV]
(or arXiv:2609.07460v1 [cs.CV] for this version)
https://doi.org/10.48550/arXiv.2609.07460 Focus to learn more arXiv-issued DOI via DataCite (pending registration)
arXivLabs is a framework that allows collaborators to develop and share new arXiv features directly on our website.
Both individuals and organizations that work with arXivLabs have embraced and accepted our values of openness, community, excellence, and user data privacy. arXiv is committed to these values and only works with partners that adhere to them.
Have an idea for a project that will add value for arXiv's community? Learn more about arXivLabs.
Full text under the publisher's open licence · 235 words
Related coverage

Synthesize Realistic 3D Medical Images at Scale to Ship Pre‑Trained Models
NVIDIA · May 22, 2026
MedForj: An open, large-scale foundational generative prior for high-resolution 3D brain MRI
arXiv · Oct 7, 2026
Gaussian Flow Dynamics: Simulation-Free Neural SDE Learning Beyond One-Time Marginals
arXiv · Oct 6, 2026
Speed Limit for Information Acquisition in Stochastic Learning Dynamics
arXiv · Sep 9, 2026