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This study presents LLM4MOF, a multi-agent framework that uses large language models to perform interpretable inverse design for metal-organic frameworks without relying on large labeled datasets. The system successfully navigates combinatorial chemical spaces by generating hypotheses and attributing performance gains to specific structural factors, outperforming traditional optimization methods like Bayesian search. Its ability to derive distinct design rules from natural-language requests marks a significant step toward data-efficient generative chemistry driven by AI agents.
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Interpretable Inverse Design of Metal-Organic Frameworks with Large Language Model Agents

arXiv2 min read

arXiv:2606.29459v2 Announce Type: replace-cross Abstract: Inverse design of metal-organic frameworks (MOFs) requires navigating combinatorial spaces with costly property labels and opaque machine-learning models. We introduce LLM4MOF, a closed-loop multi-agent framework that converts a natural-language target into chemical hypotheses, constraints, diagnostic tests, and feedback. One agent proposes interpretable hypotheses over metal nodes, linkers, pore geometry, and functionality. Another converts them into constraints selecting MOFs defined by a node, linker, and topology. The Matchmaker forms four beams to attribute gains to geometry, chemistry, or metal choice: full hypothesis, chemistry, metal only, and random baseline. Blind to database landscapes, LLM4MOF enriches top performers across six adsorption, separation, and electronic-structure tasks within 400 evaluations. It also designs and live-simulates de novo MOFs spanning H2 storage, SF6 capture, and C2H6/C2H4 separation, deriving a distinct design rule for each objective. Under an identical nominal evaluation budget it consistently outperforms random search, Bayesian optimization, and genetic algorithms, and the outcome is insensitive to the language-model backend. All of this uses not a single property-labeled training structure, whereas generative alternatives train on thousands to hundreds of thousands. A new objective requires only a natural-language request: interpretable inverse design at a fraction of the data cost of existing approaches.

Abstract:Inverse design of metal-organic frameworks (MOFs) requires navigating combinatorial spaces with costly property labels and opaque machine-learning models. We introduce LLM4MOF, a closed-loop multi-agent framework that converts a natural-language target into chemical hypotheses, constraints, diagnostic tests, and feedback. One agent proposes interpretable hypotheses over metal nodes, linkers, pore geometry, and functionality. Another converts them into constraints selecting MOFs defined by a node, linker, and topology. The Matchmaker forms four beams to attribute gains to geometry, chemistry, or metal choice: full hypothesis, chemistry, metal only, and random baseline. Blind to database landscapes, LLM4MOF enriches top performers across six adsorption, separation, and electronic-structure tasks within 400 evaluations. It also designs and live-simulates de novo MOFs spanning H2 storage, SF6 capture, and C2H6/C2H4 separation, deriving a distinct design rule for each objective. Under an identical nominal evaluation budget it consistently outperforms random search, Bayesian optimization, and genetic algorithms, and the outcome is insensitive to the language-model backend. All of this uses not a single property-labeled training structure, whereas generative alternatives train on thousands to hundreds of thousands. A new objective requires only a natural-language request: interpretable inverse design at a fraction of the data cost of existing approaches.

Machine Learning (cs.LG); Materials Science (cond-mat.mtrl-sci); Artificial Intelligence (cs.AI); Computation and Language (cs.CL)

arXiv:2606.29459 [cs.LG]

(or arXiv:2606.29459v2 [cs.LG] for this version)

https://doi.org/10.48550/arXiv.2606.29459 Focus to learn more arXiv-issued DOI via DataCite

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Full text under the publisher's open licence · 297 words

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