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This study provides a mechanistic explanation of how Large Language Models decide to include inline citations in Retrieval-Augmented Generation, revealing that the process relies on a distributed network of attention heads and MLP layers rather than a single component. By selectively adjusting these specific internal pathways, researchers can significantly repair missed citations and remove spurious ones without compromising answer accuracy, though this does not fully resolve the potential for false confidence in model outputs.
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How Do LLMs Cite? A Mechanistic Interpretation of Attribution in Retrieval-Augmented Generation

arXiv3 min read

arXiv:2606.28358v2 Announce Type: replace-cross Abstract: Retrieval-Augmented Generation (RAG) aims to enhance the trustworthiness of Large Language Models (LLMs) by grounding their outputs in external documents, often using inline citations for verifiability. However, the faithfulness of these citations -- whether the model genuinely uses a source to generate an answer -- remains a critical, unverified assumption. This paper offers the first mechanistic account of how a large language model decides whether to attach an inline citation while answering a factoid question. Using the Llama-3.1-8B-Instruct model in a controlled experimental environment based on the PopQA dataset, we employ an activation patching approach. We map the underlying mechanism responsible for citation, discovering that it is not a single, localized component but a distributed, multi-stage "attributional ensemble" of attention heads and MLP layers. We show that amplifying or attenuating only those critical heads and MLPs repairs over 90% of missed citations and eliminates 69% of spurious ones on PopQA without harming answer accuracy. Although gains on the multi-document HotpotQA benchmark are modest, the same component set still moves citation rates in the intended direction, indicating that the underlying mechanism is not dataset-specific. The results reveal a potential disconnect between the model's apparent reasoning and its internal computational pathway, suggesting that inline citations can create a false sense of security.

Abstract:Retrieval-Augmented Generation (RAG) aims to enhance the trustworthiness of Large Language Models (LLMs) by grounding their outputs in external documents, often using inline citations for verifiability. However, the faithfulness of these citations -- whether the model genuinely uses a source to generate an answer -- remains a critical, unverified assumption. This paper offers the first mechanistic account of how a large language model decides whether to attach an inline citation while answering a factoid question. Using the Llama-3.1-8B-Instruct model in a controlled experimental environment based on the PopQA dataset, we employ an activation patching approach. We map the underlying mechanism responsible for citation, discovering that it is not a single, localized component but a distributed, multi-stage "attributional ensemble" of attention heads and MLP layers. We show that amplifying or attenuating only those critical heads and MLPs repairs over 90% of missed citations and eliminates 69% of spurious ones on PopQA without harming answer accuracy. Although gains on the multi-document HotpotQA benchmark are modest, the same component set still moves citation rates in the intended direction, indicating that the underlying mechanism is not dataset-specific. The results reveal a potential disconnect between the model's apparent reasoning and its internal computational pathway, suggesting that inline citations can create a false sense of security.

This preprint has not undergone peer review or any post-submission improvements or corrections. The Version of Record of this contribution is published in Advances in Information Retrieval, ECIR 2026, Lecture Notes in Computer Science, vol. 16485, pp. 458-473, and is available online at this https URL

Information Retrieval (cs.IR); Artificial Intelligence (cs.AI); Computation and Language (cs.CL)

I.2.7; H.3.3; I.2.6

arXiv:2606.28358 [cs.IR]

(or arXiv:2606.28358v2 [cs.IR] for this version)

Advances in Information Retrieval, ECIR 2026. Lecture Notes in Computer Science, vol. 16485, pp. 458-473. Springer, Cham (2026)

https://doi.org/10.1007/978-3-032-21324-2_35 DOI(s) linking to related resources

Full text under the publisher's open licence · 301 words

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