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This paper introduces FoSTA, a novel framework for label-supervised manifold alignment that constructs task-aware intra-domain affinities to improve cross-domain correspondence in multimodal datasets. By leveraging shared class-semantic structures within supervised forest geometries, the method effectively addresses limitations in existing approaches regarding partial labeling and batch correction. The results demonstrate robust performance on both synthetic benchmarks and real-world applications like single-cell data integration, advancing the state of representation learning.
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Forest-Guided Semantic Transport for Label-Supervised Manifold Alignment

arXiv2 min read

arXiv:2602.00974v2 Announce Type: replace Abstract: Label-supervised manifold alignment bridges the gap between unsupervised and correspondence-based paradigms by leveraging shared label information to align multimodal datasets. However, existing methods either rely on label-independent intra-domain geometry or incorporate supervision primarily through the alignment objective, rather than directly constructing task-aware intra-domain affinities. To address this limitation, we introduce FoSTA (Forest-guided Semantic Transport Alignment), which learns supervised forest geometries independently within each domain and uses their shared class-semantic structure to infer cross-domain correspondences without predefined anchors. FoSTA extends RF-GAP affinities to partially labeled data and aligns the resulting semantic representations through scalable hierarchical transport. Extensive comparisons with established baselines demonstrate strong correspondence recovery and semantic structure preservation on synthetic and real-world benchmarks, including multimodal data integration and single-cell batch correction.

Abstract:Label-supervised manifold alignment bridges the gap between unsupervised and correspondence-based paradigms by leveraging shared label information to align multimodal datasets. However, existing methods either rely on label-independent intra-domain geometry or incorporate supervision primarily through the alignment objective, rather than directly constructing task-aware intra-domain affinities. To address this limitation, we introduce FoSTA (Forest-guided Semantic Transport Alignment), which learns supervised forest geometries independently within each domain and uses their shared class-semantic structure to infer cross-domain correspondences without predefined anchors. FoSTA extends RF-GAP affinities to partially labeled data and aligns the resulting semantic representations through scalable hierarchical transport. Extensive comparisons with established baselines demonstrate strong correspondence recovery and semantic structure preservation on synthetic and real-world benchmarks, including multimodal data integration and single-cell batch correction.

Machine Learning (cs.LG)

arXiv:2602.00974 [cs.LG]

(or arXiv:2602.00974v2 [cs.LG] for this version)

https://doi.org/10.48550/arXiv.2602.00974 Focus to learn more arXiv-issued DOI via DataCite

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Full text under the publisher's open licence · 213 words

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