multi-omics-pipeline
From the author
Pipeline skill for multi-omics data processing and integration. Use when the user asks to map gene IDs between HGNC Ensembl and UniProt, convert between omic data formats, run batch correction with ComBat or ComBat-seq, perform GSEA or over-representation analysis on multi-omic results, run consensus clustering on integrated data, execute MOFA2 in R or mofapy2 in Python, build a multi-omics ETL pipeline, harmonize feature identifiers across omics layers, or run clusterProfiler enrichment. Triggers include "map Ensembl to HGNC", "ID mapping omics", "ComBat code", "run MOFA2", "mofapy2", "GSEA Python", "fgsea R", "consensus clustering", "multi-omics pipeline", "gseapy", "biomaRt", "clusterProfiler", "mixOmics DIABLO".
Install
npx skills add awslabs/hcls-agent-skills --skill multi-omics-pipeline -a claude-code
Installs to .claude/skills/multi-omics-pipeline/ · Each command fetches the skill straight from GitHub with the open skills CLI.
Byte-identical to the scanned commit, with the repository’s licence and a SOURCE.txt.
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Why 82
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