muon-multiomics-singlecell
From the author
Multi-modal single-cell analysis with muon/MuData. Joint RNA+ATAC (10x Multiome), CITE-seq (RNA+protein), other multi-omics. MuData holds per-modality AnnData with shared obs. WNN joint embedding, per-modality preprocessing, MOFA factor analysis. Use scanpy-scrna-seq for single-modality RNA; use muon when combining 2+ omics from the same cells.
Install
npx skills add jaechang-hits/SciAgent-Skills --skill muon-multiomics-singlecell -a claude-code
Installs to .claude/skills/muon-multiomics-singlecell/ · Each command fetches the skill straight from GitHub with the open skills CLI.
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