plink2-gwas-analysis
From the author
GWAS and population genetics tool. Processes PLINK (.bed/.bim/.fam), VCF, and BGEN; runs QC (MAF, HWE, missingness), IBD estimation, PCA, and linear/logistic regression GWAS. Outputs Manhattan-ready summary stats. Use regenie or SAIGE for biobanks (>100k samples) needing mixed models.
Install
npx skills add jaechang-hits/SciAgent-Skills --skill plink2-gwas-analysis -a claude-code
Installs to .claude/skills/plink2-gwas-analysis/ · Each command fetches the skill straight from GitHub with the open skills CLI.
No download: this skill’s licence (GPL-3.0) does not let us redistribute its files. The install commands fetch them from GitHub instead.
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