nf-core Pipelines Skills Index
De la autor
Skills for using nf-core community pipelines to process omics data, from installation and configuration to running specific analysis pipelines.
Instalare
npx skills add BioTender-max/awesome-bio-agent-skills --skill 'nf-core Pipelines Skills Index' -a claude-code
Se instalează în .claude/skills/nf-core-Pipelines-Skills-Index/ · Fiecare comandă descarcă skill-ul direct de pe GitHub cu utilitarul open source skills.
Fără descărcare: licența acestui skill (Personalizată sau neclară) nu ne permite să-i redistribuim fișierele. Comenzile de instalare le iau direct de pe GitHub.
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Verificări de siguranță pe SKILL.md
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De ce 74
aiqbench calculează scorul de încredere din semnale publice. Nu este un audit de securitate, așa că citește un skill înainte să-l instalezi.
Skill-uri similare
Cele mai apropiate de acesta prin ce fac și când sunt folosite.
- multi-omics-pipelineawslabs/hcls-agent-skillsPipeline skill for multi-omics data processing and integration. Use when the user asks to map gene IDs between HGNC Ensembl and UniProt, convert between omic data formats, run batch correction with ComBat or ComBat-seq, perform GSEA or over-representation analysis on multi-omic results, run consensus clustering on integrated data, execute MOFA2 in R or mofapy2 in Python, build a multi-omics ETL pipeline, harmonize feature identifiers across omics layers, or run clusterProfiler enrichment. Triggers include "map Ensembl to HGNC", "ID mapping omics", "ComBat code", "run MOFA2", "mofapy2", "GSEA Python", "fgsea R", "consensus clustering", "multi-omics pipeline", "gseapy", "biomaRt", "clusterProfiler", "mixOmics DIABLO".Date★ 72
- Omics Analysis Skills IndexBioTender-max/awesome-bio-agent-skillsSkills for single-cell and spatial omics data analysis. Best practices, code snippets, and workflows for the scverse ecosystem.Date★ 215
- snowflake-native-pipelines-and-governancevaquarkhan/data-engineering-agent-skillsGuides agents through Snowflake-native pipeline and governance workflows. Use when building or reviewing Snowflake pipelines with Streams, Tasks, Dynamic Tables, Snowpipe, Snowpark, masking policies, row access, secure sharing, and warehouse-native operational controls.Date★ 62
- nextflowK-Dense-AI/scientific-agent-skillsBuilds, runs, and debugs Nextflow DSL2 pipelines and nf-core workflows. Use for Nextflow, nf-core, .nf files, nextflow.config, processes/channels/operators, samplesheets, nf-test, modules/subworkflows, container and executor configuration, HPC/SLURM or cloud deployment, and failed or resumed pipeline runs.Testare★ 56.2K
- maya-pipelinedcc-mcp/dcc-mcp-coreDomain skill — Maya asset pipeline orchestration: set up project directory structures, export scenes to USD, and coordinate multi-step DCC workflows. Use when initialising a Maya project or exporting assets for a downstream pipeline. Not for raw geometry editing — use maya-geometry for that. Not for low-level USD file inspection — use usd-tools for that.Redactare★ 73
- run_modelsBioTender-max/awesome-bio-agent-skillsUse this skill whenever the user wants to run phenotype-prediction models, browse model cards, map model inputs/outputs, or choose an execution route for fMRI/sMRI based models. This is a model-entry orchestration skill: it routes requests to model-specific docs and delegates preprocessing to modality skills.Planificare★ 215
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