Agent skills you can check before you install
Public SKILL.md skills from GitHub repositories with 50+ stars and from the vendors themselves, scanned and scored. Install any of them with one command in Claude Code, Cursor, Codex, GitHub Copilot or Gemini CLI.
49,534 skills from 2,407 repositories · updated 39 minutes ago
49,534 skills
- telluriumK-Dense-AI/scientific-agent-skillsSimulates biochemical kinetic models from SBML or Antimony with Tellurium and libRoadRunner, checks model units, compares deterministic parameter perturbations, and exports and replays SBML plus SED-ML COMBINE archives. Use for reaction-network time courses, kinetic parameters, concentration dynamics and reproducible simulation experiments; steady-state constraint-based metabolic flux analysis belongs to cobrapy.OtherNo warnings★ 56.2K↓ —Also in 1 other repo
- permission-checkpedrohcgs/claude-code-my-workflowDiagnose why Claude Code is (or isn't) prompting for permission. By default reads only repo-local layers (CLI project, CLI project-local, VSCode workspace). Host-global layers (CLI user `~/.claude/`, VSCode user settings) are read ONLY when the user explicitly confirms — those files may contain unrelated paths or secrets. Use when user says "why is it asking me to approve?", "permission check", "why am I getting prompts?", "bypass isn't working", "check my permissions". Read-only diagnostic.EngineeringNo warnings★ 1.7K↓ —
- devils-advocatepedrohcgs/claude-code-my-workflowAdversarial 5-7 question challenge to a deck's pedagogical choices — ordering, prerequisites, cognitive load, motivation. Use when user says "devil's advocate", "poke holes in this deck", "push back on my slides", "stress-test the design", "what would a skeptical student ask?". Read-only; surfaces questions to force rethinking. Lighter than `/pedagogy-review`.TestingNo warnings★ 1.7K↓ —
- scenario-video-editingscenario-labs/skillsUse when editing footage already on Scenario through MCP with a tool model, not a new generation: LUT grading, color correction, grain, vignette, blur, sharpen, glow, tint, desaturate, posterize, solarize, oilify, cubism, chromatic aberration, dodge and burn on a clip; trimming, splitting, reversing, resizing, re-encoding, frame extraction, image sequences; chroma key, green or blue screen removal to transparent WebM or ProRes MOV, background removal, segmentation masks, subjects as layers.MediaNo warnings★ 2.8K↓ —
- camsnapLeoYeAI/agent-master-skillsCapture frames or clips from RTSP/ONVIF cameras.OtherNo warnings★ 2.2K↓ —
- verify-artifactpedrohcgs/claude-code-my-workflowProve that the file you are about to send, publish, or hand off IS the thing you mean — before it leaves your hands. Rebuild from source, check integrity, diff the derived artifact against its source, and require the recipient to echo what they received. Use before sending a paper/PDF for review, shipping a release or replication package, handing files to a coauthor or collaborator, uploading anything to an external reviewer or model, or publishing. Prevents an entire review/QA cycle from being spent on defects that exist only in the artifact, not in the work.TestingNo warnings★ 1.7K↓ —
- test-gap-auditgithub/awesome-copilotRun a read-only audit for missing, weak, stale, or mis-scoped test coverage. If the user does not name a scope, audit the full repository and identify important code paths, routes, features, services, workflows, and contracts that lack proper tests. If the user names a feature, PR, branch, route, workflow, service, bug fix, API, security-sensitive path, or risky code change, focus only on that specific scope. Use when the user asks what tests are missing, whether coverage is enough, what regression tests to add, or how to prove a change is safe. This is not a general bug audit and not a security review; it evaluates whether behavior is covered by tests.TestingNo warnings★ 40.8K↓ —
- docs-sync-auditgithub/awesome-copilotRun a read-only documentation drift audit for a feature, PR, branch, release, API, configuration change, workflow, CLI, package, or repository area. Use when the user asks whether docs are stale, missing, inconsistent with code, or need updates after code changes. Checks README files, setup guides, API docs, env docs, changelogs, examples, comments, generated docs, and user-facing instructions. This is not a general code review; it compares what the docs claim against what the code does.EngineeringNo warnings★ 40.8K↓ —
- create-lecturepedrohcgs/claude-code-my-workflowCreate a new Beamer lecture `.tex` from source papers and materials, with notation consistency checks and the project's preamble wired in. Use when user says "create a lecture on X", "new lecture from these papers", "start a deck on topic Y", "scaffold a new Beamer file", "build me a lecture from these PDFs". Scaffolds the full deck — NOT for compiling existing `.tex` (use `/compile-latex`).DocumentsNo warnings★ 1.7K↓ —
- oracle-reviewpedrohcgs/claude-code-my-workflowA ready-to-fork Claude Code template for academics using LaTeX/Beamer + R. Multi-agent review, quality gates, adversarial QA, and replication protocols.EngineeringNo warnings★ 1.7K↓ —
- verify-claimspedrohcgs/claude-code-my-workflowRun Chain-of-Verification (CoVe) on a draft or a block of text with factual claims. Spawns the `claim-verifier` agent in a fresh context (never a conversation fork) so it never sees the draft — then reports which claims are supported, contradicted, or unverifiable. Use when user says "verify these citations", "check the claims in X", "did I hallucinate anything", "fact-check this draft", "run CoVe on this", or after any text generation that asserts facts about papers, datasets, or numerical results. NOT for style/grammar review (use `/proofread`) or substance review (use `/review-paper`).ScienceNo warnings★ 1.7K↓ —
- grant-proposalpedrohcgs/claude-code-my-workflowScaffold a research grant proposal (NSF, NIH, ERC, or foundation) by composing existing primitives — pulls identification strategy from an `/interview-me` spec, delegates the data-management plan to `/data-management-plan` and the facilities statement to `/capture-environment`, and emits a funder-requirements checklist. Use when user says "draft a grant", "write a proposal", "NSF proposal", "NIH aims", "ERC application", "foundation grant", "specific aims", or "scaffold a grant proposal". NOT a submission tool — produces a draft the user uploads to the sponsor's portal themselves.ScienceNo warnings★ 1.7K↓ —
- data-analysispedrohcgs/claude-code-my-workflowEnd-to-end R data analysis pipeline — exploration → cleaning → regression → publication-ready tables and figures. Use when user says "analyze this dataset", "run a regression on X", "explore this CSV", "full analysis workflow", "get me summary stats and a regression", or points at a `.csv`/`.rds`/`.dta` and asks for empirical results. Produces numbered R scripts in `scripts/R/` and outputs to `output/`.DataNo warnings★ 1.7K↓ —
- voice-profilepedrohcgs/claude-code-my-workflowExtract a written voice profile from your own prior papers, then use it to keep new drafts sounding like you. Reads a corpus one document at a time via subagents, produces a reusable profile on disk (lexicon, sentence rhythm, how you open and close, hedging habits, deliberate quirks), and audits a draft against it. Use when the user says "make this sound like me", "match my voice", "profile my writing", "why does this draft not sound like my papers", or before drafting prose that will carry their name. The positive counterpart to /humanize, which only detects AI tells.WritingNo warnings★ 1.7K↓ —
- portaljs-check-data-qualitydatopian/portaljsAudit a local or remote tabular file (CSV/TSV) for common data quality issues — schema, nulls, types, duplicates. Read-only. Use when a dataset needs a quality check before publishing, or a showcase renders wrong (blank cells, garbled numbers, an unsortable date column) and the cause needs isolating.DataNo warnings★ 2.4K↓ —
- validate-bibpedrohcgs/claude-code-my-workflowValidate bibliography entries against citations in all lecture files. Structural checks (missing/unused entries, malformed fields) by default; `--semantic` adds citation-drift detection, DOI verification, and style-consistency checks.OtherNo warnings★ 1.7K↓ —
- gentle-ai-tui-designNewGentleman-Programming/gentle-shellTrigger: terminal UI design, TUI redesign, Gentle Shell look, IDE in a terminal, sidebar/status bar polish, critique TUI. Design, critique and refine terminal UIs with visual proof.DesignNo warnings★ 1.7K↓ —
- power-analysispedrohcgs/claude-code-my-workflowCompute statistical power, required sample size, and minimum detectable effect (MDE) for a study design, then write a registry-ready power section. Handles two-arm RCTs (with clustering / ICC and unequal allocation), multiple-arm corrections, and a simulation-based power option for non-standard designs (DiD/event-study, IV, panel). Use when user says "power analysis", "power calculation", "MDE", "minimum detectable effect", "how big a sample do I need", "is my study powered", "power for an RCT", or when /preregister needs a power section for an experiment. Produces a power/MDE table, power curves, and a methods paragraph to paste into a preregistration.DesignNo warnings★ 1.7K↓ —
- scenario-seedance-draftsscenario-labs/skillsUse when exploring several Seedance video takes before paying for a final: cheap 480p previews, variations of one shot to compare, reviewing and ranking takes before a pick, or finalizing a chosen preview to 1080p without regenerating it, including within its 7-day window. Keywords: Seedance draft, draft mode, draft complete, finalize, 480p preview, variations, takes, review, rank, pick, Seedance 2.5.MediaNo warnings★ 2.8K↓ —
- triage-inboxpedrohcgs/claude-code-my-workflowTriage academic email and calendar (Gmail / Google Calendar via the session's MCP) into a prioritized digest plus a referee-obligations tracker — classifying referee requests, R&R and editor correspondence, co-author threads, seminar and conference invites, and grant/admin deadlines, and proposing a human-gated action for each (draft reply, calendar hold, scaffold a project, snooze). Use when user says "triage my inbox", "check my academic email", "what needs my attention this week", "go through my mail", or when run as a scheduled routine. NEVER auto-sends or auto-accepts anything.WritingNo warnings★ 1.7K↓ —
- interview-mepedrohcgs/claude-code-my-workflowInteractive interview that formalizes a fuzzy research idea into a structured spec (RQ, hypotheses, identification, data needs, empirical strategy). Use when user says "interview me", "help me think through this idea", "I have a half-baked idea", "formalize this into a project", "walk me through framing a study". Multi-turn Q&A; saves spec to disk. NOT for lit review (`/lit-review`) or ideation from scratch (`/research-ideation`).PlanningNo warnings★ 1.7K↓ —
- slide-excellencepedrohcgs/claude-code-my-workflowMulti-agent comprehensive slide review (visual + pedagogy + proofreading, plus TikZ / parity / substance conditionally). Use when user says "full review", "excellence pass", "comprehensive check", "review everything", "pre-release review", "slide excellence", or before teaching / shipping a deck. Fanout wrapper — for a single lens, use `/visual-audit`, `/pedagogy-review`, or `/proofread` directly.DocumentsNo warnings★ 1.7K↓ —
- compile-latexpedrohcgs/claude-code-my-workflowCompile a Beamer LaTeX slide deck with XeLaTeX (3 passes + bibtex). Use when user says "compile", "build the slides", "rebuild the PDF", "run latex", "render the tex", or asks why a `.tex` file isn't producing a PDF. Operates on `Slides/*.tex`.DocumentsNo warnings★ 1.7K↓ —
- new-diagrampedrohcgs/claude-code-my-workflowScaffold a new TikZ diagram from the snippet gallery with prevention rules pre-applied (explicit node dimensions, coordinate map, directional edge labels). Compiles standalone, invokes tikz-reviewer with citations from tikz-measurement.md, and loops on revisions until APPROVED.OtherNo warnings★ 1.7K↓ —
pathway-enrichment
K-Dense-AI/scientific-agent-skills
TestingUpdated 3 days ago
From the author
Performs pathway and gene-set enrichment analysis on gene lists or ranked gene data and interprets the results. Used when the user has a set of genes (differentially expressed genes from PyDESeq2/Scanpy, CRISPR-screen hits, cluster marker genes, proteomics hits) and wants to know which biological pathways, GO terms, or gene sets are over-represented or enriched. Covers over-representation analysis (ORA / Enrichr / Fisher / hypergeometric), ranked Gene Set Enrichment Analysis (GSEA / preranked), single-sample scoring (ssGSEA/GSVA), and functional profiling via gseapy, g:Profiler, Enrichr libraries, MSigDB, GO, KEGG, Reactome, and WikiPathways — plus gene-ID mapping, choosing the right background universe, multiple-testing correction, redundancy reduction, dotplots/enrichment maps, and publication-ready tables. Use this for "pathway analysis", "enrichment analysis", "GO enrichment", "KEGG/Reactome pathways", "GSEA", "over-representation", "functional annotation", or "what pathways are my genes in".
Install
npx skills add K-Dense-AI/scientific-agent-skills --skill pathway-enrichment -a claude-code
Installs to .claude/skills/pathway-enrichment/ · Each command fetches the skill straight from GitHub with the open skills CLI.
Download .zip
Byte-identical to the scanned commit, with the repository’s licence and a SOURCE.txt.
What it can touch
Runs bundled scriptsUses the networkLicence: MIT
Safety checks on SKILL.md
- Ships scripts we have not reviewedLow
Why 89
Security85
Provenance95
Maintenance100
Licence100
Adoption73
Files (6)
- SKILL.md
- references/databases-and-gene-sets.md
- references/gseapy.md
- references/interpretation.md
- references/verified-api.md
- scripts/run_enrichment.py