Agent skills you can check before you install
Public SKILL.md skills from GitHub repositories with 50+ stars and from the vendors themselves, scanned and scored. Install any of them with one command in Claude Code, Cursor, Codex, GitHub Copilot or Gemini CLI.
49,534 skills from 2,407 repositories · updated 38 minutes ago
49,534 skills
- genomic-coordinatesK-Dense-AI/scientific-agent-skillsConverts genomic intervals between coordinate conventions, normalises and compares variant representations, and detects assembly or contig-naming mismatches before they corrupt an analysis. Used whenever coordinates cross a format, tool, or assembly boundary - converting between BED, GFF/GTF, VCF, SAM/BAM, WIG, PSL, genePred, Picard interval_list, or region strings; reconciling 0-based half-open with 1-based inclusive; left-aligning or trimming indels; checking whether two variant records describe the same change; mapping genomic to transcript, CDS, or protein positions; auditing a BED/GTF/VCF for convention violations; or diagnosing GRCh37 vs hg19 vs GRCh38 vs T2T, chr-prefix, and liftover problems. Triggers include "off by one", "0-based", "1-based", "half-open", "coordinate system", "left-align", "normalize variant", "bcftools norm", "chr prefix", "wrong genome build", "liftover", "REF mismatch", and "HGVS".ScienceNo warnings★ 56.2K↓ —
- qiime2-ampliconK-Dense-AI/scientific-agent-skillsProcesses paired-end 16S amplicon reads into QIIME 2 ASVs and taxonomy with retained artifact provenance. Checks paired FASTQ manifests, primer orientation diagnostics, predicted post-trimming overlap, sample IDs, runtime versions and read retention, and guides selection of compatible taxonomic classifiers.OtherNo warnings★ 56.2K↓ —
- cold-start-problemwondelai/skillsStart and scale networked products using Andrew Chen's "The Cold Start Problem" framework for network effects. Use when the user mentions "network effects", "chicken and egg", "cold start", "two-sided marketplace", "atomic network", "hard side", "liquidity", "critical mass", "invite-only launch", "how do I get my first users", or "the marketplace has no buyers or sellers". Also trigger when launching a marketplace, social, or collaboration product that is worthless without other users, deciding launch sequencing and seeding tactics, or diagnosing stalled network growth at scale. Covers the five stages: cold start, tipping point, escape velocity, hitting the ceiling, and the moat. For word-of-mouth virality, see contagious. For habit-driven retention, see hooked-ux.DesignNo warnings★ 2.6K↓ —Also in 2 other repos
- r-package-checkpedrohcgs/claude-code-my-workflowRun the full R package release gate — regenerate docs, run the test suite, run R CMD check --as-cran, and triage every ERROR / WARNING / NOTE against CRAN policy before a release or submission. Use when the user says "check my R package", "R CMD check", "is this package CRAN-ready", "run devtools::check", "prepare for CRAN submission", or points at a directory containing a DESCRIPTION file. Produces a check report + CRAN-submission checklist in `quality_reports/`.TestingNo warnings★ 1.7K↓ —
- commitpedrohcgs/claude-code-my-workflowCommit the current work — runs the quality, consistency and passport gates, branches off main if needed, stages specific files, and writes a commit whose subject states what is now true. Pushes and opens a pull request only with --pr or when the user asks; never merges — a merge happens only when the user explicitly says to merge. Use ONLY on explicit commit intent — user says "commit", "let's commit this", "open a PR", or prefixes with `/commit`. Do NOT auto-invoke on vague end-of-task phrases ("we're done", "wrap up") — those require explicit confirmation first. Never force-pushes or skips hooks.EngineeringNo warnings★ 1.7K↓ —
- playwright-proLeoYeAI/agent-master-skillsProduction-grade Playwright testing toolkit. Use when the user mentions Playwright tests, end-to-end testing, browser automation, fixing flaky tests, test migration, CI/CD testing, or test suites. Generate tests, fix flaky failures, migrate from Cypress/Selenium, sync with TestRail, run on BrowserStack. 55 templates, 3 agents, smart reporting.TestingNo warnings★ 2.2K↓ —
- i-amLeoYeAI/agent-master-skillsSimple personality analysis. Consolidated SKILL.md with embedded code. AI-guided installation and IM-adaptive file sending.EngineeringNo warnings★ 2.2K↓ —
- scenario-workflowsscenario-labs/skillsUse when a task involves running a Scenario workflow through MCP, including anything the user calls a Scenario app, a saved pipeline, or a multi-step generation graph. Triggers include listing workflows, building workflow_run's inputs object, pricing a run with a dry run, approving or rejecting a stuck approval node, a run rejected for input length, or a workflows_list reply flooding the context. Creating or editing graphs is scenario-workflow-authoring. Keywords: workflow, app, approval gate.WritingNo warnings★ 2.8K↓ —
- widerspruch-interessenKlotzkette/claude-fuer-deutsches-rechtFür Widerspruch: Mehrparteienkonflikt und Interessenmatrix: ordnet Norm, Beweislast und Gegenargument; Ergebnis: Prüfprodukt mit Risiko und nächstem Schritt.OtherNo warnings★ 1.8K↓ —
- frame-a-proposalinkeep/open-knowledgeFrame a new design proposal (RFC-shape) under proposals/ — problem before solution, named beneficiary and observable change, real alternatives, honest drawbacks, and a live open-questions backlog. Read when asked to frame a proposal, write an RFC, propose a design, pitch a change, draft a PRD-style design doc, or open a design proposal for review. Do NOT read to record a decision after it is accepted (use record-a-decision), to write an implementation spec (use write-a-spec), to write a postmortem (use write-a-postmortem), or to review or critique an existing design (use review-a-design).DesignNo warnings★ 4.8K↓ —
- portaljs-migratedatopian/portaljsMigrate (harvest) datasets between open-data platforms. Reads CKAN, a DCAT-US /data.json catalog (DKAN, ArcGIS Hub, data.gov), a DCAT / DCAT-AP RDF feed (JSON-LD, Turtle, or RDF/XML), Socrata, OpenDataSoft, or an ArcGIS FeatureServer, and writes them to a static PortalJS catalog or pushes them into a CKAN instance over its API. Use when moving datasets from an external open-data platform into a PortalJS portal, or bridging one CKAN instance to another.WritingNo warnings★ 2.4K↓ —
- citation-managementK-Dense-AI/scientific-agent-skillsComprehensive citation management for academic research. Search OpenAlex, PubMed, and Google Scholar for papers, extract accurate metadata, validate citations, and generate properly formatted BibTeX entries. This skill should be used when you need to find papers, verify citation information, convert DOIs to BibTeX, or ensure reference accuracy in scientific writing.ScienceNo warnings★ 56.2K↓ —
- zhengxi-viewslyra81604/zhengxi-views郑希观点库——基于易方达基金经理郑希 2012–2026 年全部公开观点原文语料，外加从语料蒸馏、有本人原话佐证的郑希投资方法的可溯源 research skill。能做： (1) 溯源问答——他怎么看 AI算力/光通信/新能源/半导体/ROE 等，引用其原话作答； (2) 讲解他的投资方法/框架/选股逻辑；(3) 前瞻应用——用他的方法分析当下任意主题/行业/个股，语料没谈过也能据框架推演； (4) 风格化点评——用他季报/手记的口吻写市场点评、季度展望； (5) 言行对照——用他全部基金真实数据（季度持仓/净值/业绩/规模/任职回报）核对"说的"与"买的"，或答他的业绩/重仓/规模； (6) 全市场查询对比——内置约 2.7 万只基金列表，按需抓任意基金真实数据做查询或与郑希对比； (7) 郑希框架评分——给一只基金按他的方法打分（多像郑希会买的）。 When the user mentions 郑希/易方达郑希/zhengxi, asks his view on a sector/stock/theme, his 投资方法/框架/选股/风格/持仓/业绩/净值/规模, wants to apply his approach, a commentary 用郑希口吻, to check words vs holdings, or to look up/compare/score ANY China mutual fund (任意基金/某基金经理/同类对比/给基金打分)——use this skill, even if they don't say "skill", even if the topic isn't in his corpus (fall back to his method). 引用忠于原文、不杜撰；推演与原话区分。研究学习辅助，非投资建议。ScienceNo warnings★ 1.8K↓ —
- tilLeoYeAI/agent-master-skillsCapture and manage TIL (Today I Learned) entries on OpenTIL. Use /til <content> to capture, /til to extract insights from conversation, or /til list|publish|edit|search|delete|status|sync|tags|categories|batch to manage entries -- all without leaving the CLI.WritingNo warnings★ 2.2K↓ —
- pentest-checklistzebbern/claude-code-guideThis skill should be used when the user asks to "plan a penetration test", "create a security assessment checklist", "prepare for penetration testing", "define pentest scope", "follow security testing best practices", or needs a structured methodology for penetration testing engagements.SecurityNo warnings★ 4.7K↓ —
- vueLeoYeAI/agent-master-skillsVue 3 Composition API, script setup macros, reactivity system, and built-in components. Use when writing Vue SFCs, defineProps/defineEmits/defineModel, watchers, or using Transition/Teleport/Suspense/KeepAlive.WritingNo warnings★ 2.2K↓ —Also in 2 other repos
- agent-platform-skill-registrygoogle/skillsInteract with the Gemini Enterprise Agent Platform Skill Registry to create and search for available skills. Use this skill to enable agents to register functionality or discover new capabilities.OfficialOtherNo warnings★ 22.2K↓ —
- imsgLeoYeAI/agent-master-skillsiMessage/SMS CLI for listing chats, history, watch, and sending.EngineeringNo warnings★ 2.2K↓ —
- refactoring-patternswondelai/skillsApply named refactoring transformations to improve code structure without changing behavior. Use when the user mentions "refactor this", "code smells", "extract method", "replace conditional", "technical debt", "move method", "inline variable", "decompose conditional", or "clean up this messy code". Also trigger when cleaning up legacy code, preparing code for new features by restructuring, or identifying which transformation fits a specific code smell. Covers smell-driven refactoring, safe transformation sequences, and testing guards. For code-quality foundations, see clean-code. For managing complexity, see software-design-philosophy.EngineeringNo warnings★ 2.6K↓ —Also in 2 other repos
- spotLeoYeAI/agent-master-skillsBinance Spot request using the Binance API. Authentication requires API key and secret key. Supports testnet and mainnet.EngineeringNo warnings★ 2.2K↓ —
- kobeLeoYeAI/agent-master-skillsA comprehensive Kobe Bryant knowledge skill. When the user mentions or implies Kobe Bryant, Black Mamba, #24, #8, or the Mamba Mentality, this skill activates to provide accurate, detailed information about Kobe's career, achievements, legacy, and philosophy. It covers his entire basketball journey from high school to the Hall of Fame, including stats, awards, iconic moments, and the cultural impact of his Mamba Mentality.OtherNo warnings★ 2.2K↓ —
- scenario-refine-loopscenario-labs/skillsUse when a Scenario output must be checked and improved rather than accepted first roll: iterating a generation until it matches the brief, fixing a batch that came back off-brief, retrying failed shots methodically, wiring an automated generate, review, revise loop, or deciding whether to re-prompt, swap references, inpaint, post-process, or change model. Keywords: refine, iterate, critique, review loop, QA, self-correction, verify, acceptance criteria, retry, drift.TestingNo warnings★ 2.8K↓ —
- nature-image2pptYuan1z0825/nature-skillsReconstruct slide images, screenshots, scanned PDFs, or image-only PPTX files as object-level editable PowerPoint. Use for 图片转可编辑PPT、截图还原PPT and diagram reconstruction; not authoring a new deck from research notes.DocumentsNo warnings★ 52.4K↓ —
- software-lifecycleinkeep/open-knowledgeHow to work in a Software Lifecycle project (the `software-lifecycle` starter pack): proposals → decisions → specs → postmortems, plus guides. Read when the project has these folders, or when asked how this project is organized. Carries the doc lifecycle, status flows, and per-folder agent behaviors so that guidance does not live inside template bodies or folder descriptions. The five workflows — frame a proposal, write a spec, record a decision, write a postmortem, review a design — each ship as their own sibling skill in this pack. Complements the platform `open-knowledge` skill; does not replace it.DesignNo warnings★ 4.8K↓ —
bulk-rnaseq
K-Dense-AI/scientific-agent-skills
ScienceUpdated 3 days ago
From the author
Prepares bulk RNA-seq FASTQ, Salmon, STAR or featureCounts output for gene-level differential expression. Covers nf-core/rnaseq and standalone quantification, biological replication, strandedness, reference provenance, validated count assembly and a PyDESeq2 handoff. Use for FASTQ-to-counts analysis, nf-core/rnaseq configuration, STAR/Salmon quantification, or building a counts matrix for DESeq2. For single-cell data use scanpy; for statistical fitting alone use pydeseq2.
Install
npx skills add K-Dense-AI/scientific-agent-skills --skill bulk-rnaseq -a claude-code
Installs to .claude/skills/bulk-rnaseq/ · Each command fetches the skill straight from GitHub with the open skills CLI.
Download .zip
Byte-identical to the scanned commit, with the repository’s licence and a SOURCE.txt.
What it can touch
Runs bundled scriptsUses the networkLicence: MIT
Safety checks on SKILL.md
- Ships scripts we have not reviewedLow
Why 89
Security85
Provenance95
Maintenance100
Licence100
Adoption73
Files (8)
- SKILL.md
- references/counts-and-handoff.md
- references/design-and-qc.md
- references/upstream-manual.md
- references/upstream-nfcore.md
- scripts/_tabular.py
- scripts/build_counts_matrix.py
- scripts/validate_samplesheet.py