Agent skills you can check before you install
Public SKILL.md skills from GitHub repositories with 50+ stars and from the vendors themselves, scanned and scored. Install any of them with one command in Claude Code, Cursor, Codex, GitHub Copilot or Gemini CLI.
49,534 skills from 2,407 repositories · updated 41 minutes ago
49,534 skills
- capture-environmentpedrohcgs/claude-code-my-workflowSnapshot the computational environment for a replication package — detects the analysis stack (R / Stata / Python) and emits the right lockfiles (renv.lock + sessionInfo.txt, requirements.txt / environment.yml / uv.lock, Stata version + ado package list), records seeds and RNG kind, optionally writes a pinning Dockerfile, and produces a paste-ready "Computational requirements" block. Use when user says "capture the environment", "snapshot my dependencies", "pin the versions", "make a renv.lock / requirements.txt", "make this byte-reproducible", or before releasing a replication package to openICPSR / the AEA Data Editor.WritingNo warnings★ 1.7K↓ —
- replication-packagepedrohcgs/claude-code-my-workflowAssemble a submission-ready replication package to the AEA Data and Code Availability Standard (DCAS) / openICPSR / Social Science Reproduction Platform expectations — standard replication README, dataset manifest, computational-requirements capture, a Table/Figure → script:line map, and a confidential-data deposit plan. Use when user says "build the replication package", "prepare the openICPSR deposit", "make the AEA data and code package", "DCAS compliance", "assemble the deposit for the journal", or after a paper is accepted and the journal's data editor needs the package. NOT a numeric verifier — it calls /audit-reproducibility to confirm claims reproduce before packaging.ScienceNo warnings★ 1.7K↓ —
- respond-to-refereespedrohcgs/claude-code-my-workflowGenerate a structured response-to-referees document from a referee report and the revised manuscript. Maps each referee comment to the specific revision, classifies coverage (addressed / partially / deferred / disagreement), and drafts polite but firm responses. Use during the R&R (revise-and-resubmit) stage of paper revision.ScienceNo warnings★ 1.7K↓ —
- ai-seoLeoYeAI/agent-master-skillsWhen the user wants to optimize content for AI search engines, get cited by LLMs, or appear in AI-generated answers. Also use when the user mentions 'AI SEO,' 'AEO,' 'GEO,' 'LLMO,' 'answer engine optimization,' 'generative engine optimization,' 'LLM optimization,' 'AI Overviews,' 'optimize for ChatGPT,' 'optimize for Perplexity,' 'AI citations,' 'AI visibility,' 'zero-click search,' 'how do I show up in AI answers,' 'LLM mentions,' or 'optimize for Claude/Gemini.' Use this whenever someone wants their content to be cited or surfaced by AI assistants and AI search engines. For traditional technical and on-page SEO audits, see seo-audit. For structured data implementation, see schema-markup.MarketingNo warnings★ 2.2K↓ —
- scenario-blenderscenario-labs/skillsUse when an agent works in an open Blender scene through the Scenario for Blender extension's local MCP server (scenario-blender on 127.0.0.1:9876): connecting Claude Code, Cursor, Claude Desktop or Codex to Blender, the headless scenario_blender command, quoting and generating Scenario images, PBR materials, 3D meshes, video, audio or 360 environments from the scene, capturing the viewport or selected meshes as references, placing saved results, Render Video camera paths, or execute_python.MediaNo warnings★ 2.8K↓ —
- dsh-error-handlingNewqufei1993/skills-hub实现或审查错误传播、部分成功、结果未知、恢复、重试、取消或失败反馈时使用，明确状态保证和错误处理责任。OtherNo warnings★ 1.9K↓ —
- scenario-model-trainingscenario-labs/skillsUse when generated assets must keep a consistent style, character, or product look and references stop scaling, or when a user asks to train a custom model through the Scenario MCP, fine-tune a LoRA, clone a voice, curate a training dataset, choose a base model, set epochs and sample prompts, estimate training cost, diagnose a trained model that lost its identity or has one epoch, or generate with a trained model. Keywords: custom model, LoRA, dataset curation, epoch previews.OtherNo warnings★ 2.8K↓ —
- docs-sync-auditgithub/awesome-copilotRun a read-only documentation drift audit for a feature, PR, branch, release, API, configuration change, workflow, CLI, package, or repository area. Use when the user asks whether docs are stale, missing, inconsistent with code, or need updates after code changes. Checks README files, setup guides, API docs, env docs, changelogs, examples, comments, generated docs, and user-facing instructions. This is not a general code review; it compares what the docs claim against what the code does.EngineeringNo warnings★ 40.8K↓ —
- dsh-pre-push-checksNewqufei1993/skills-hub在交付或推送前验证改动时使用，核实项目必需检查、当前构建产物和真实用户行为，区分通过、失败、未运行与环境阻塞。OtherNo warnings★ 1.9K↓ —
- hivemind-graphactiveloopai/hivemindQuery the local code graph (functions, classes, calls, imports) through the Deeplake mount at memory/graph/. Use when the user asks structural questions about the codebase — "what calls X?", "what does Y import?", "where is Z defined?", "what is the architecture / which subsystems exist?". The graph is an AST-derived map of the repo, queried as files (no build needed — it rebuilds automatically).PlanningNo warnings★ 1.6K↓ —
- hivemind-goalsactiveloopai/hivemindCreate, track and update team goals in Hivemind via the `hivemind` CLI. Use whenever the user mentions a goal, objective, target, milestone, or asks to track progress on something measurable. ALSO use when the user says "task", "todo", "work item", "remind me to", "fix X", or any actionable work item — the goal system replaced the legacy `hivemind tasks` CLI and now covers both objectives and tasks.EngineeringNo warnings★ 1.6K↓ —
- scenario-ugcscenario-labs/skillsUse when producing UGC-style creator video with Scenario: a talking-head ad or testimonial from a portrait and a script, a founder clip, a product demo or unboxing, a reaction or before-after cut, a faceless voiceover over b-roll, or vertical social video for TikTok, Reels, or Shorts that must feel filmed on a phone rather than produced. Keywords: UGC, creator ad, talking head, testimonial, avatar, lipsync, founder video, social proof, faceless voiceover, organic, vertical video.MediaNo warnings★ 2.8K↓ —
- smbcrm-advanced-toolsLeoYeAI/agent-master-skillsUse when helping SMBcrm customers with Private Integration Tokens, REST API v2, workflows, custom webhooks, MCP, or Agent Studio API. Use for API troubleshooting, automation design, data sync, AI assistant setup, or any task involving https://services.smbcrm.com endpoints.DesignNo warnings★ 2.2K↓ —
- differential-auditpedrohcgs/claude-code-my-workflowCompare two implementations of the same thing — a port (R↔Python↔Stata), a reimplementation, a replication package, a refactor, or a new version against the old — so that agreement means something. Freeze inputs first, inventory every expected output, test the comparator itself, compare every channel (not just the headline number), and give each divergence a stable ID and a smallest witness. Use for cross-language parity, replication, upgrade/regression gates, or whenever "the numbers match" is about to license a claim.TestingNo warnings★ 1.7K↓ —
- slide-excellencepedrohcgs/claude-code-my-workflowMulti-agent comprehensive slide review (visual + pedagogy + proofreading, plus TikZ / parity / substance conditionally). Use when user says "full review", "excellence pass", "comprehensive check", "review everything", "pre-release review", "slide excellence", or before teaching / shipping a deck. Fanout wrapper — for a single lens, use `/visual-audit`, `/pedagogy-review`, or `/proofread` directly.DocumentsNo warnings★ 1.7K↓ —
- simulation-studypedrohcgs/claude-code-my-workflowScaffold and run a reproducible Monte Carlo simulation study in R — a declared assumption regime, a parameterized DGP, an estimator grid, a seeded replication loop, and a summary of bias, RMSE, empirical SE, coverage, size/power with Monte Carlo standard errors. Use when the user says "run a Monte Carlo simulation", "simulation study", "check the bias/coverage of an estimator", "compare estimators in simulation", "size and power simulation", "Monte Carlo experiment", or wants to demonstrate an estimator's finite-sample properties. Produces a numbered R script in `scripts/R/` and saves per-replication raw results + a summary table to `output/`.ProductivityNo warnings★ 1.7K↓ —
- devils-advocatepedrohcgs/claude-code-my-workflowAdversarial 5-7 question challenge to a deck's pedagogical choices — ordering, prerequisites, cognitive load, motivation. Use when user says "devil's advocate", "poke holes in this deck", "push back on my slides", "stress-test the design", "what would a skeptical student ask?". Read-only; surfaces questions to force rethinking. Lighter than `/pedagogy-review`.TestingNo warnings★ 1.7K↓ —
- create-lecturepedrohcgs/claude-code-my-workflowCreate a new Beamer lecture `.tex` from source papers and materials, with notation consistency checks and the project's preamble wired in. Use when user says "create a lecture on X", "new lecture from these papers", "start a deck on topic Y", "scaffold a new Beamer file", "build me a lecture from these PDFs". Scaffolds the full deck — NOT for compiling existing `.tex` (use `/compile-latex`).DocumentsNo warnings★ 1.7K↓ —
- grant-proposalpedrohcgs/claude-code-my-workflowScaffold a research grant proposal (NSF, NIH, ERC, or foundation) by composing existing primitives — pulls identification strategy from an `/interview-me` spec, delegates the data-management plan to `/data-management-plan` and the facilities statement to `/capture-environment`, and emits a funder-requirements checklist. Use when user says "draft a grant", "write a proposal", "NSF proposal", "NIH aims", "ERC application", "foundation grant", "specific aims", or "scaffold a grant proposal". NOT a submission tool — produces a draft the user uploads to the sponsor's portal themselves.ScienceNo warnings★ 1.7K↓ —
- compress-sessionpedrohcgs/claude-code-my-workflowDistill the current conversation into a structured note (decisions made, open questions, file pointers with line numbers, next 1–3 actions) and save to `quality_reports/session_logs/` before auto-compression. Differs from `/checkpoint` (explicit stop-point snapshot) and from auto-compaction (which truncates rather than distills). Use when context is approaching auto-compact threshold, when a long pipeline has accumulated many decisions, or when the user says "compress", "distil this session", "before we hit auto-compact", "structured handoff before context resets".ProductivityNo warnings★ 1.7K↓ —
- disclosure-checkpedrohcgs/claude-code-my-workflowPre-screen analysis outputs (tables, figures, logs) built on restricted or confidential data for statistical-disclosure-limitation problems before any release. Scans for small cell counts, complementary-suppression gaps, dominance (p-percent / (n,k)), re-identifiable exact counts, PII leakage, and unrounded sensitive statistics; classifies each finding CRITICAL / WARNING / OK and gates on any CRITICAL. Use before depositing or sharing restricted-data results, or when the user says "disclosure check", "SDL scan", "is this output safe to release", "check for small cells", "disclosure avoidance", "pre-screen for the RDC", or "can I export this from the enclave".OtherNo warnings★ 1.7K↓ —
- verify-claimspedrohcgs/claude-code-my-workflowRun Chain-of-Verification (CoVe) on a draft or a block of text with factual claims. Spawns the `claim-verifier` agent in a fresh context (never a conversation fork) so it never sees the draft — then reports which claims are supported, contradicted, or unverifiable. Use when user says "verify these citations", "check the claims in X", "did I hallucinate anything", "fact-check this draft", "run CoVe on this", or after any text generation that asserts facts about papers, datasets, or numerical results. NOT for style/grammar review (use `/proofread`) or substance review (use `/review-paper`).ScienceNo warnings★ 1.7K↓ —
- codebase-wikiinkeep/open-knowledgeHow to work in a Codebase Wiki project (the `codebase-wiki` starter pack): an agent-authored, source-grounded wiki of the surrounding codebase. Read when the project has a `wiki/` knowledge base with `architecture/`, `modules/`, `flows/`, `concepts/`, and `guides/` sections plus `wiki/OVERVIEW.md`, or when asked to generate or refresh a wiki of this codebase. Carries the per-folder rules and freshness + log discipline, summarizes the audience/depth knobs and source-reference convention, and bundles the full generate/refresh procedure in `references/`. Complements the platform `open-knowledge` skill; does not replace it.PlanningNo warnings★ 4.8K↓ —
- compile-latexpedrohcgs/claude-code-my-workflowCompile a Beamer LaTeX slide deck with XeLaTeX (3 passes + bibtex). Use when user says "compile", "build the slides", "rebuild the PDF", "run latex", "render the tex", or asks why a `.tex` file isn't producing a PDF. Operates on `Slides/*.tex`.DocumentsNo warnings★ 1.7K↓ —
pysam
K-Dense-AI/scientific-agent-skills
ScienceUpdated 3 days ago
From the author
Provides Python/HTSlib workflows for genomic files. Used when reading, querying, filtering, or writing SAM/BAM/CRAM, VCF/BCF, FASTA/FASTQ, or tabix data with pysam, including pileup, coverage, indexing, and CRAM references.
Install
npx skills add K-Dense-AI/scientific-agent-skills --skill pysam -a claude-code
Installs to .claude/skills/pysam/ · Each command fetches the skill straight from GitHub with the open skills CLI.
Download .zip
Byte-identical to the scanned commit, with the repository’s licence and a SOURCE.txt.
What it can touch
Runs bundled scriptsUses the networkLicence: MIT
Safety checks on SKILL.md
- Ships scripts we have not reviewedLow
Why 89
Security85
Provenance95
Maintenance100
Licence100
Adoption73
Files (14)
- SKILL.md
- references/alignment_files.md
- references/api_reference.md
- references/common_workflows.md
- references/coordinates_and_indexing.md
- references/cram_and_performance.md
- references/migration_to_0_24.md
- references/sequence_files.md
- references/sources.md
- references/variant_files.md
- scripts/alignment_qc.py
- scripts/filter_alignments.py
- +2 more