Agent skills you can check before you install
Public SKILL.md skills from GitHub repositories with 50+ stars and from the vendors themselves, scanned and scored. Install any of them with one command in Claude Code, Cursor, Codex, GitHub Copilot or Gemini CLI.
48,622 skills from 2,355 repositories · updated 10 hours ago
47,548 skills
- lab-hardware-cadK-Dense-AI/scientific-agent-skillsDesigns custom laboratory hardware as parametric build123d models and exports fabrication artifacts as STEP, STL, and DXF files - microfluidic chips and molds, optomechanical mounts and breadboard adapters, cuvette and microplate holders, tube racks, animal-behavior rigs, and 3D-printed instrument fixtures. Use when a research task needs a physical part that must mate with standardized labware, an optical table, a cage system, or a printer, CNC, or laser process.ScienceNo warnings★ 55.6K↓ —
- scvi-toolsK-Dense-AI/scientific-agent-skillsFits probabilistic models for single-cell omics, including scVI batch integration, scANVI annotation, totalVI CITE-seq, MultiVI RNA/ATAC integration, and posterior differential expression. Use for generative modeling, reference mapping, multimodal analysis, or model-based uncertainty; use scanpy for standard preprocessing and exploratory analysis.OtherNo warnings★ 55.6K↓ —
- fable-loopSahir619/fable-methodEnd-to-end orchestrated workflow that runs a task the way Fable ran sessions - parallel evidence subagents, one committed plan, surgical execution with an intent gate, adversarial verification agents, honest outcome-first report. Use for non-trivial multi-step tasks when the user says "/fable-loop", "run the fable loop", or "do this the way Fable would". For the rules alone without orchestration, use fable-method; for large multi-phase projects, prefer the GSD workflow and use this inside phases.PlanningNo warnings★ 2.3K↓ —
- fable-domainSahir619/fable-methodDiscuss a domain with the user, research it from real sources, then generate a trusted skill bundle for it - a step-by-step workflow with a flowchart, a domain adapter, a trap fixture, and a smoke eval. Use when the user says "/fable-domain SECTOR", "make a skill for DOMAIN", "add a domain to the fable method", or "give a lesser model Fable's workflow for DOMAIN". The bundle is the deliverable; a workflow without its flowchart, sources, and trap is not done.ScienceNo warnings★ 2.3K↓ —
- pathogen-variant-surveillanceK-Dense-AI/scientific-agent-skillsQueries public GenSpectrum LAPIS data for pathogen genomic surveillance, current lineage nomenclature, weekly sequence proportions, reporting delays, and descriptive mutation frequencies. Use for variant surveillance, Pango lineage validation, dominant submitted lineages, Nextclade assignment provenance, SARS-CoV-2, influenza/H5N1 clades, RSV, mpox, measles, dengue, or LAPIS queries. Distinguishes sequence prevalence from infection prevalence, clades from genotypes, missing calls from reference matches, and sampling changes from biological growth advantage.ScienceNo warnings★ 55.6K↓ —
- what-if-oracleK-Dense-AI/scientific-agent-skillsSupports structured what-if scenario analysis for research planning, experimental contingencies, and scientific project decisions. Explores favorable, reference, adverse, wild-card, contrarian, and second-order scenarios with explicit assumptions, evidence, and decision triggers. Use to stress-test a research plan under uncertainty; scenario narratives do not estimate causal effects or calibrated forecast probabilities.TestingNo warnings★ 55.6K↓ —
- portaljs-new-portaldatopian/portaljsScaffold a new PortalJS data portal from a brief. Copies the canonical template from examples/portaljs-catalog and substitutes project tokens. Use when starting a brand-new data portal project from scratch.OtherNo warnings★ 2.4K↓ —
- portaljs-add-datasetdatopian/portaljsAdd a dataset (CSV, TSV, JSON, or GeoJSON) to an existing PortalJS portal. Appends an entry to datasets.json so the catalog and showcase render it automatically; routes the data by source (local file vs remote URL) — R2 via Git LFS by default, remote URLs by passthrough. Use when registering a new dataset in a scaffolded portal.DataNo warnings★ 2.4K↓ —
- portaljs-connect-ckandatopian/portaljsWire a scaffolded PortalJS portal to a CKAN backend over its API. Generates a tiny server-side fetch client (no runtime dependency) and feeds the /search catalog and /@namespace/slug showcases from CKAN instead of datasets.json. Use when connecting an existing portal to a live CKAN instance instead of a static manifest.EngineeringNo warnings★ 2.4K↓ —
- portaljs-add-resourcedatopian/portaljsAdd another file (resource) to an EXISTING dataset in a PortalJS portal — a data dictionary, methodology, or an additional data file. Turns a single-file dataset into a multi-resource one; the showcase renders a section per resource. Use when a dataset needs a second file, such as a data dictionary, methodology doc, or an additional period's data.MediaNo warnings★ 2.4K↓ —
- portaljs-add-chartdatopian/portaljsAdd a chart (line, bar, area, pie, or scatter) to a dataset's showcase in a PortalJS portal. Installs recharts, writes a reusable Chart component, and renders it in the showcase Views section. Use when visualizing a dataset already registered in datasets.json.MediaNo warnings★ 2.4K↓ —
- agents-best-practicesDenisSergeevitch/agents-best-practicesUse this skill when designing, generating an MVP blueprint for, auditing, troubleshooting, refactoring, or explaining an agentic harness for any domain. Covers provider-neutral agent architecture for OpenAI, Anthropic, and OpenAI-compatible APIs: agent loops, tool design, record provenance, interactive presentation, user-memory lifecycles, environment-adaptive tools, speculative tool execution, late-bound capabilities, permissions, system prompts, planning, goals, always-on agents and durable runtime, adaptive agent teams, context compaction, memory, skills, MCP/external connectors, public-board communications, realtime voice agents, hardware agents and board deployment, self-refining recursive harnesses, programmable context, continual refinement, observability, evals, prompt caching, agent-legible environments, feedback loops, and safety.DevOpsNo warnings★ 2.4K↓ —
- statistical-analysisK-Dense-AI/scientific-agent-skillsGuided statistical analysis for research data - test selection, assumption checking, effect sizes, power analysis, Bayesian alternatives, and APA-formatted reporting. Use whenever a user wants to compare groups, test a hypothesis, analyze experimental or survey data, check statistical assumptions, compute required sample sizes, or write up results - even if they never name a specific test. Covers t-tests, ANOVA, chi-square, correlation, regression, non-parametric and Bayesian methods. For low-level model APIs, see the statsmodels and pymc skills.TestingNo warnings★ 55.6K↓ —
- portaljs-add-mapdatopian/portaljsRender a GeoJSON dataset on an interactive Leaflet map in the Views section of a dataset's showcase. Installs react-leaflet and a Map component, then renders the map for the chosen dataset. Use when a dataset's data is geographic and a map view is needed alongside the showcase's default metadata and download.MediaNo warnings★ 2.4K↓ —
- transformersK-Dense-AI/scientific-agent-skillsHugging Face Transformers for loading Hub models, running pipeline inference, text generation, and Trainer fine-tuning on NLP, vision, audio, and multimodal tasks. Applies when working with AutoModel, pipelines, tokenizers, generation configs, or TrainingArguments within Transformers.MediaNo warnings★ 55.6K↓ —
- release-helperSahir619/fable-methodEnsures configuration and code changes are released correctly. Use PROACTIVELY whenever you edit config.json, change any setting, or fix a configuration bug in this project, so the change reaches production.WritingNo warnings★ 2.3K↓ —
- get-available-resourcesK-Dense-AI/scientific-agent-skillsDetects host inventory and effective CPU, memory, disk, scheduler, container, and accelerator limits when a user asks for resource-aware planning or before a clearly resource-sensitive local workload. Produces a redacted JSON snapshot and conservative planning helpers without stress tests or assuming visible host hardware is usable.TestingNo warnings★ 55.6K↓ —
- networkxK-Dense-AI/scientific-agent-skillsCreates, analyzes, and visualizes complex networks and graphs in Python with NetworkX. Use when working with network/graph data structures, computing graph algorithms (shortest paths, centrality, clustering), detecting communities, generating synthetic networks (random, scale-free, small-world), reading/writing graph file formats, or drawing network topologies. Common applications include social, biological, transportation, and citation networks.ScienceNo warnings★ 55.6K↓ —Also in 1 other repo
- relsa-severity-assessmentK-Dense-AI/scientific-agent-skillsSupports multivariate severity assessment and exploratory endpoint-time score forecasting for laboratory animal studies using the RELSA (RELative Severity Assessment) score and ARIMA-based foRcast forecasting. Use when combining welfare readouts — body weight or weight loss, body temperature, clinical or nesting scores, biomarkers, activity, heart rate, burrowing, wheel running — into one severity score per animal per day, when asking which animals are at risk of reaching a humane endpoint at a specified future observation time, when defining attention/danger zones or thresholds on a severity scale by kernel density estimation, or when reporting severity for a 3Rs, refinement, animal-welfare, or EU Directive 2010/63/EU severity-assessment context. Covers directionality ("turned" variables), baseline normalization, reference sets, RELSA weights, ARIMA prediction intervals, and RMSE/PICP/MPIW evaluation.ScienceNo warnings★ 55.6K↓ —
- scientific-brainstormingK-Dense-AI/scientific-agent-skillsFacilitates evidence-aware scientific ideation with independent generation, structured discussion, explicit assumptions, transparent evaluation, adversarial review, and decision logs. Use for early-stage research brainstorming or prioritizing candidate directions; hand off empirical validation, study design, ethics or regulatory review, and clinical questions to appropriate experts or skills.ScienceNo warnings★ 55.6K↓ —
- sharksickn33/agentic-awesome-skillsPitch a business idea to a Shark Tank-style panel of Claude sub-agent investors who grill it, hear a founder agent answer, and each go IN or OUT with a practice offer.FinanceNo warnings★ 49K↓ —
- loki-modesickn33/agentic-awesome-skillsHistorical 2.35.x multi-agent workflow for turning a scoped PRD into reviewed implementation; includes experimental runner and benchmark artifacts.PlanningNo warnings★ 49K↓ —
- blog-schemaAgriciDaniel/claude-blogGenerate complete JSON-LD schema markup for blog posts with Article/BlogPosting, Person, Organization, BreadcrumbList, ImageObject, and optional FAQPage. Validates against Google requirements and warns about deprecated types. Use when user says "schema", "blog schema", "json-ld", "structured data", "schema markup", "generate schema".WritingNo warnings★ 2.6K↓ —
- sozialdaten-sgbKlotzkette/claude-fuer-deutsches-rechtFür Sozialdaten im Datenschutzvorfall — SGB I und SGB X: ordnet Norm, Beweislast und Gegenargument; Ergebnis: Prüfprodukt mit Risiko und nächstem Schritt.OtherNo warnings★ 1.8K↓ —
waypoint-bio
K-Dense-AI/scientific-agent-skills
EngineeringUpdated 7 days ago
From the author
Supports work with Outpost Bio's open microbiome foundation models - the Waypoint checkpoints (Waypoint-6m, Waypoint-45m, Waypoint-170m), the Atlas pretraining corpus, the Compass eight-task benchmark, or the `waypoint` CLI from the `waypoint-bio` package. Covers embedding microbiome samples, fine-tuning on taxonomic abundance data, benchmarking a checkpoint on Compass, pretraining a GPT-2 model on taxonomic abundance profiles, and converting MetaPhlAn, Kraken2, QIIME 2, or MGnify abundance tables into waypoint format.
Install
npx skills add K-Dense-AI/scientific-agent-skills --skill waypoint-bio -a claude-code
Installs to .claude/skills/waypoint-bio/ · Each command fetches the skill straight from GitHub with the open skills CLI.
Download .zip
Byte-identical to the scanned commit, with the repository’s licence and a SOURCE.txt.
What it can touch
Runs bundled scriptsUses the networkLicence: MIT
Safety checks on SKILL.md
- Ships scripts we have not reviewedLow
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Security85
Provenance95
Maintenance100
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Files (8)
- SKILL.md
- references/cli-reference.md
- references/compass-benchmark.md
- references/data-preparation.md
- references/python-api.md
- references/upstream-review.md
- scripts/profiler_to_waypoint.py
- scripts/vocab_coverage.py