Agent skills you can check before you install
Public SKILL.md skills from GitHub repositories with 50+ stars and from the vendors themselves, scanned and scored. Install any of them with one command in Claude Code, Cursor, Codex, GitHub Copilot or Gemini CLI.
48,622 skills from 2,355 repositories · updated 9 hours ago
47,548 skills
- molfeatK-Dense-AI/scientific-agent-skillsFeaturizes small molecules with Molfeat for QSAR/QSPR, chemical similarity, virtual screening, and molecular ML. Covers ECFP/MACCS fingerprints, RDKit descriptors, pharmacophores, pretrained embeddings, configuration persistence, and molecule-to-label alignment.ScienceNo warnings★ 55.6K↓ —Also in 1 other repo
- diffdockK-Dense-AI/scientific-agent-skillsPredicts protein-small-molecule binding poses with DiffDock and DiffDock-L from PDB or sequence plus SMILES/SDF/MOL2. Covers batch docking, pose triage, confidence interpretation, and validation. Use for molecular docking and virtual-screening pose generation, not binding-affinity prediction.ScienceNo warnings★ 55.6K↓ —Also in 1 other repo
- pydicomK-Dense-AI/scientific-agent-skillsReads, inspects, writes, transforms, and preflights local DICOM datasets and pixel data. Applies to DICOM metadata, transfer syntaxes, compression plugins, frames, private elements, JSON, and bounded de-identification review.WritingNo warnings★ 55.6K↓ —Also in 2 other repos
- pysamK-Dense-AI/scientific-agent-skillsProvides Python/HTSlib workflows for genomic files. Used when reading, querying, filtering, or writing SAM/BAM/CRAM, VCF/BCF, FASTA/FASTQ, or tabix data with pysam, including pileup, coverage, indexing, and CRAM references.ScienceNo warnings★ 55.6K↓ —Also in 2 other repos
- deepspot-mK-Dense-AI/scientific-agent-skillsGenerates transcriptome-wide virtual spatial transcriptomics from H&E histology with DeepSpot-M. Used for predicted log1p-CPM expression from 224x224 tiles at about 20x, querying the released protein-coding gene panel by symbol, and whole-slide prediction after resolution-aware tiling with histolab.DocumentsNo warnings★ 55.6K↓ —
- pennylaneK-Dense-AI/scientific-agent-skillsBuilds and differentiates PennyLane quantum circuits, hybrid PyTorch or JAX models, molecular VQE and QAOA workflows. Use for variational quantum algorithms, quantum machine learning, simulator validation, and moving validated circuits to provider plugins. For hardware-specific compilation use qiskit or cirq; for open-system dynamics use qutip.PlanningNo warnings★ 55.6K↓ —Also in 1 other repo
- liteparseK-Dense-AI/scientific-agent-skillsLocal document and PDF parsing that returns spatial text with bounding boxes. Use for extracting text from PDFs, DOCX, Office files, and images; running OCR on scans; producing layout-preserved JSON for RAG; batch-ingesting folders of papers; or rendering pages to PNG for multimodal agents. Distinguishing capabilities are spatial text boxes, Markdown, page raster output, and local parsing with optional custom HTTP OCR.DocumentsNo warnings★ 55.6K↓ —Also in 1 other repo
- cobrapyK-Dense-AI/scientific-agent-skillsPerforms constraint-based metabolic modeling with COBRApy, including FBA, pFBA, FVA, gene knockouts, flux sampling, growth media, production envelopes, gap filling, and SBML model validation for systems biology and metabolic engineering.ScienceNo warnings★ 55.6K↓ —Also in 2 other repos
- postgres-database-migrationtimescale/pg-aiguideUse this skill for planning, testing, and safely executing PostgreSQL schema migrations — especially when working with production data or shared databases. **Trigger when user asks to:** - Test a schema migration before applying it to production - Add, remove, or rename columns safely on a live table - Change a column's data type without downtime - Add or drop indexes, constraints, or foreign keys on large tables - Understand which ALTER TABLE operations lock the table - Roll back a failed migration - Plan a zero-downtime migration strategy - Fork a database to test a migration safely **Keywords:** migration, schema change, ALTER TABLE, add column, drop column, rename column, change type, zero downtime, lock, AccessExclusiveLock, concurrent index, forking, rollback, backfill, deploy Covers: lock-level reference for every common DDL operation, safe migration patterns, fork-based testing, zero-downtime column changes, index creation, constraint addition, backfill strategies, pre/post-migration validation, and rDataNo warnings★ 1.9K↓ —
- hivemindactiveloopai/hivemindGlobal team and org memory powered by Activeloop. ALWAYS check BOTH built-in memory AND Hivemind memory when recalling information.ProductivityNo warnings★ 1.6K↓ —
- bulk-rnaseqK-Dense-AI/scientific-agent-skillsPrepares bulk RNA-seq FASTQ, Salmon, STAR or featureCounts output for gene-level differential expression. Covers nf-core/rnaseq and standalone quantification, biological replication, strandedness, reference provenance, validated count assembly and a PyDESeq2 handoff. Use for FASTQ-to-counts analysis, nf-core/rnaseq configuration, STAR/Salmon quantification, or building a counts matrix for DESeq2. For single-cell data use scanpy; for statistical fitting alone use pydeseq2.ScienceNo warnings★ 55.6K↓ —
- analytical-method-validationK-Dense-AI/scientific-agent-skillsPlans, executes, and documents validation, verification, and transfer of analytical procedures under the governing framework - ICH Q2(R2) and Q14, USP <1220>/<1225>/<1226>, ICH M10 bioanalytical, CLSI EP, or ISO/IEC 17025. Use for HPLC, LC-MS/MS, GC, CE, ICP-MS, dissolution, qNMR, qPCR, NIR, and ligand binding or cell-based assays whenever the question is whether a procedure is fit for its intended purpose. Triggers include "method validation", "analytical method validation", "AMV", "validation protocol", "acceptance criteria", "linearity", "reportable range", "accuracy and precision", "repeatability", "intermediate precision", "recovery", "LOD", "LOQ", "detection limit", "quantitation limit", "specificity", "robustness", "method transfer", "method comparison", "Deming", "Passing-Bablok", "Bland-Altman", "equivalence testing", "OOS investigation", "ICH Q2", "Q2(R2)", "Q14", "USP 1225", "ICH M10", "incurred sample reanalysis", "ISR", "CLSI EP", and any request to show that an assay works.TestingNo warnings★ 55.6K↓ —
- generate-imageK-Dense-AI/scientific-agent-skillsGenerates or edits images with AI models through the OpenRouter Image API (Gemini, Seedream, Recraft, GPT-Image, Riverflow). Use for photos, illustrations, artwork, concept art, visual assets, logos, and image editing or compositing from reference images. For flowcharts, circuits, pathways, and other technical diagrams, use the scientific-schematics skill instead.MediaNo warnings★ 55.6K↓ —
- scholar-evaluationK-Dense-AI/scientific-agent-skillsProvides qualitative-first, evidence-traceable developmental review of scholarly works and audit low-stakes research-assessment rubrics with optional local quality controls. Never use for ranking people or consequential decisions.ScienceNo warnings★ 55.6K↓ —
- capital-allocationcbrock84/headcountEvaluates where to spend limited capital — investment appraisal, hurdle rates, payback, and comparing proposals that are not alike. Use this to evaluate an investment or major purchase, compare competing funding requests, set a hurdle rate, decide between building and buying, or review whether past investments delivered what was claimed.FinanceNo warnings★ 2.6K↓ —
- portfolio-governancecbrock84/headcountGoverns the portfolio of work — intake, prioritization, stage gates, resource contention, and stopping things. Use this to set up intake and prioritization, run a stage gate, decide between competing initiatives, resolve resource contention across projects, or work out why everything is in flight and nothing is finishing.OtherNo warnings★ 2.6K↓ —
- hivemind-memoryactiveloopai/hivemindGlobal team and org memory powered by Activeloop. ALWAYS check BOTH built-in memory AND Hivemind memory when recalling information.ProductivityNo warnings★ 1.6K↓ —
- latchbio-integrationK-Dense-AI/scientific-agent-skillsBuilds, registers, debugs, and operates bioinformatics workflows on Latch using the Python SDK, CLI, Latch Data and Registry, Nextflow, Snakemake, programmatic execution, and Latch MCP. Use when authoring or deploying Latch workflows, configuring resources or interfaces, moving data, integrating Registry, or launching and monitoring runs.DevOpsNo warnings★ 55.6K↓ —
- scvi-toolsK-Dense-AI/scientific-agent-skillsFits probabilistic models for single-cell omics, including scVI batch integration, scANVI annotation, totalVI CITE-seq, MultiVI RNA/ATAC integration, and posterior differential expression. Use for generative modeling, reference mapping, multimodal analysis, or model-based uncertainty; use scanpy for standard preprocessing and exploratory analysis.OtherNo warnings★ 55.6K↓ —
- scientific-brainstormingK-Dense-AI/scientific-agent-skillsFacilitates evidence-aware scientific ideation with independent generation, structured discussion, explicit assumptions, transparent evaluation, adversarial review, and decision logs. Use for early-stage research brainstorming or prioritizing candidate directions; hand off empirical validation, study design, ethics or regulatory review, and clinical questions to appropriate experts or skills.ScienceNo warnings★ 55.6K↓ —
- sl_captureKaelio/ktxHow to capture new reusable patterns into ktx's semantic layer - when a measure, segment, or join belongs in the catalog and how to write it generically so it stays small and useful over time. Loaded by the post-turn memory-agent only. The research agent does not write to the SL.ScienceNo warnings★ 1.6K↓ —
- genimlK-Dense-AI/scientific-agent-skillsSupports audited local Geniml genomic-interval workflows: validate BED and universe contracts, plan Region2Vec or scEmbed runs, inspect model/tokenizer compatibility, and assess consensus universes.ScienceNo warnings★ 55.6K↓ —Also in 2 other repos
- canvasLeoYeAI/agent-master-skillsDisplay HTML content on connected OpenClaw nodes (Mac app, iOS, Android).OtherNo warnings★ 2.2K↓ —
- hey-lolLeoYeAI/agent-master-skillsBecome an AI creator on hey.lol - a social platform where AI agents earn money by posting content and engaging with humans.OtherNo warnings★ 2.2K↓ —
pytdc
K-Dense-AI/scientific-agent-skills
ProductivityUpdated 7 days ago
From the author
Provides Therapeutics Data Commons workflows through PyTDC for registry discovery, dataset access, task-aware splits, evaluator metrics, benchmark groups, and bounded molecular-oracle scoring. Use when working with TDC therapeutic ML datasets or benchmarks.
Install
npx skills add K-Dense-AI/scientific-agent-skills --skill pytdc -a claude-code
Installs to .claude/skills/pytdc/ · Each command fetches the skill straight from GitHub with the open skills CLI.
Download .zip
Byte-identical to the scanned commit, with the repository’s licence and a SOURCE.txt.
What it can touch
Runs bundled scriptsUses the networkLicence: MIT
Safety checks on SKILL.md
- Ships scripts we have not reviewedLow
Why 89
Security85
Provenance95
Maintenance100
Licence100
Adoption73
Files (11)
- SKILL.md
- references/datasets.md
- references/oracles.md
- references/sources.md
- references/utilities.md
- scripts/_common.py
- scripts/benchmark_evaluation.py
- scripts/cache_audit.py
- scripts/discover_metadata.py
- scripts/load_and_split_data.py
- scripts/molecular_generation.py