Agent skills you can check before you install
Public SKILL.md skills from GitHub repositories with 50+ stars and from the vendors themselves, scanned and scored. Install any of them with one command in Claude Code, Cursor, Codex, GitHub Copilot or Gemini CLI.
49,492 skills from 2,391 repositories · updated 18 hours ago
49,492 skills
- publish-to-pagesgithub/awesome-copilotPublish presentations and web content to GitHub Pages. Converts PPTX, PDF, HTML, or Google Slides to a live GitHub Pages URL. Handles repo creation, file conversion, Pages enablement, and returns the live URL. Use when the user wants to publish, deploy, or share a presentation or HTML file via GitHub Pages.DevOpsNo warnings★ 40.8K↓ —
- ai-workflow-architectcbrock84/headcountDesigns AI systems, automations, and agent workflows for a business — identifying which manual work is worth automating, how to structure the system, which tools fit, and what could go wrong. Use this to automate part of an operation, design an agent or MCP workflow, reduce repetitive manual work, connect tools into a system, decide which automation to build first, or audit an automation that is not delivering.PlanningNo warnings★ 2.6K↓ —
- bulk-rnaseqK-Dense-AI/scientific-agent-skillsPrepares bulk RNA-seq FASTQ, Salmon, STAR or featureCounts output for gene-level differential expression. Covers nf-core/rnaseq and standalone quantification, biological replication, strandedness, reference provenance, validated count assembly and a PyDESeq2 handoff. Use for FASTQ-to-counts analysis, nf-core/rnaseq configuration, STAR/Salmon quantification, or building a counts matrix for DESeq2. For single-cell data use scanpy; for statistical fitting alone use pydeseq2.ScienceNo warnings★ 56.1K↓ —
- media3-cast-integrationandroid/skillsImplements Google Cast support in Android apps using Jetpack Media3. Handles adding build dependencies, updating manifest, configuring OptionsProvider, and managing CastPlayer or RemoteCastPlayer for playback in both Compose and View-based UIs. Use when adding Cast functionality or migrating from legacy Cast SDK to Media3 Cast.OfficialOtherNo warnings★ 10.3K↓ —
- standards-alignmentcbrock84/headcountAligns learning material to the standard it claims — choosing the right framework for the grade and subject, citing standards by code rather than reproducing their text, and telling a real alignment from a decorative one. Use this to align a worksheet, lesson or workbook to Common Core, NGSS or a state framework, to check an alignment claim before publishing, or to decide what may lawfully be printed on the cover.EngineeringNo warnings★ 2.6K↓ —
- anschluss-routerKlotzkette/claude-fuer-deutsches-rechtFür Fluggastrechte — Allgemein: ordnet Norm, Beweislast und Gegenargument; Ergebnis: Prüfprodukt mit Risiko und nächstem Schritt.OtherNo warnings★ 1.8K↓ —
- nmrglueK-Dense-AI/scientific-agent-skillsProcesses calibrated one-dimensional complex NMR free-induction decays with nmrglue into phased spectra, peak candidates, and signed integration regions. Use for raw 1D NMR processing, ppm-axis verification, apodization, Fourier transformation, manual phasing, baseline correction, or reproducible spectral integration.PlanningNo warnings★ 56.1K↓ —Also in 2 other repos
- spark-memory-thermal-opswshobson/agentsManage unified memory and thermals during long-running ML jobs on NVIDIA DGX Spark. Use when planning memory headroom for a training run on GB10, when a job OOMs on unified memory, or when monitoring temperature and power during multi-hour training.ProductivityNo warnings★ 42.2K↓ —
- android-profilerandroid/skillsRecords and analyzes Android performance data and diagnoses performance bottlenecks across user apps, system apps, and system services, even if the user does not explicitly mention profiling or traces. Use when: recording system traces, CPU call stacks, Vulkan GPU/DRM memory, or Java/native heap profiles; analyzing Perfetto traces for UI jank, frame drops, ANRs, or app startup latency issues; investigating CPU bottlenecks, IPC/Binder storms, or thread scheduling stalls; diagnosing battery drain, modem power rails, and kernel wake locks; debugging memory pressure, Low Memory Kills (LMK), OOMs, leaks, and allocation churn; performing A/B baseline trace comparisons to find regressions; executing ad hoc PerfettoSQL queries on Android traces.OfficialDesignNo warnings★ 10.3K↓ —
- homeofficeKlotzkette/claude-fuer-deutsches-rechtFür Homeoffice: ordnet Norm, Beweislast und Gegenargument; Ergebnis: Prüfprodukt mit Risiko und nächstem Schritt. Fachgebiet: Berufsrecht Anwälte.OtherNo warnings★ 1.8K↓ —
- factoring-agbKlotzkette/claude-fuer-deutsches-rechtFür Factoring AGB: ordnet Norm, Beweislast und Gegenargument; Ergebnis: Prüfprodukt mit Risiko und nächstem Schritt.OtherNo warnings★ 1.8K↓ —
- slide-excellencepedrohcgs/claude-code-my-workflowMulti-agent comprehensive slide review (visual + pedagogy + proofreading, plus TikZ / parity / substance conditionally). Use when user says "full review", "excellence pass", "comprehensive check", "review everything", "pre-release review", "slide excellence", or before teaching / shipping a deck. Fanout wrapper — for a single lens, use `/visual-audit`, `/pedagogy-review`, or `/proofread` directly.DocumentsNo warnings★ 1.7K↓ —
- scenario-planningcbrock84/headcountPlans under genuine uncertainty — building scenarios, identifying which assumptions are load-bearing, setting early-warning indicators, and stress-testing a plan against futures rather than forecasting one. Use this when a decision depends on something unknowable, when a plan assumes conditions that may not hold, before a large irreversible commitment, or when a market, regulatory, or technology shift could invalidate the strategy.PlanningNo warnings★ 2.6K↓ —
- financial-reporting-and-closecbrock84/headcountRuns the period-end close and produces reporting — close calendar, reconciliations, accruals, variance analysis, and reporting that gets read. Use this to shorten or stabilize a monthly close, design a close checklist, investigate a variance, structure management reporting, or work out why the numbers keep changing after close.FinanceNo warnings★ 2.6K↓ —
- nature-paper-to-patentYuan1z0825/nature-skillsTurn research papers or inventor materials into evidence-grounded Chinese invention patent drafts and technical disclosures. Use for 技术交底书、专利撰写、现有技术对比 and Chinese DOCX patent packages; not general manuscript writing.ScienceNo warnings★ 52.2K↓ —
- bonus-rabattKlotzkette/claude-fuer-deutsches-rechtFür Bonus Rabatt: ordnet Norm, Beweislast und Gegenargument; Ergebnis: Prüfprodukt mit Risiko und nächstem Schritt.OtherNo warnings★ 1.8K↓ —
- flowkitK-Dense-AI/scientific-agent-skillsAnalyzes flow cytometry data with FlowKit, including spillover compensation, logicle and biexponential transforms, hierarchical gating, GatingML strategies, and supported FlowJo 10 workspaces. Use for reproducible gate counts, population percentages, gated fluorescence summaries, or reproducing a FlowJo analysis in Python. For FCS metadata inspection or file-format repair alone, use FlowIO.EngineeringNo warnings★ 56.1K↓ —Also in 2 other repos
- nature-responseYuan1z0825/nature-skillsDraft, audit, or revise responses to peer review, revision cover letters, and marked-manuscript or LaTeX revision packages. Use for 审稿意见回复、逐点回复、返修信、 rebuttals and edits to existing response drafts. Initial-submission materials belong to nature-writing; simulated peer review belongs to nature-reviewer.WritingNo warnings★ 52.2K↓ —
- nature-downloaderYuan1z0825/nature-skillsUse when a user needs lawful academic full text, CNKI institutional access, English OA retrieval, publisher API access, institutional browser fallback, or supporting information downloads.BrowserNo warnings★ 52.2K↓ —
- lamindbK-Dense-AI/scientific-agent-skillsManages biological datasets and models with LaminDB, including artifact registration, lineage tracking, schema validation, Bionty ontology annotation, query/search, collections, branches, storage, and workflow integrations. Use for reproducible biological data curation or a LaminDB lakehouse.ScienceNo warnings★ 56.1K↓ —Also in 2 other repos
- relionK-Dense-AI/scientific-agent-skillsValidates and executes RELION single-particle cryo-EM refinement and half-map postprocessing. Supports STAR optics/acquisition checks, particle-stack consistency, gold-standard half sets, soft-mask validation, diagnostic Fourier shell correlation, and restart guidance.OtherNo warnings★ 56.1K↓ —Also in 2 other repos
- mlkit-agent-apiandroid/skillsBuilds autonomous on-device agentic workflows in Android apps using the ML Kit GenAI Agent API powered by Gemini Nano and AICore. Use this skill when implementing conversational agents, multi-turn chat with AgentSession in a ViewModel, autonomous tool calling using Android AppFunctions (@AppFunctionDeclaration and AppFunctionAgentTools.discover), ephemeral single-turn execution with runner.runSingleTurnAsync, or handling GenAiException error resilience. It solves the problem of orchestrating local reasoning loops, typed tool dispatch, and session persistence on-device with zero cloud latency and privacy preservation. Don't use for cloud-based Gemini models or Vertex AI, single-turn text generation without agent loops (suggest Prompt API), or non-Android platforms.OfficialEngineeringNo warnings★ 10.3K↓ —
- mageckK-Dense-AI/scientific-agent-skillsAnalyzes pooled CRISPR screen FASTQ reads and guide-count matrices with MAGeCK, validates guide libraries and contrasts, measures replicate and library QC, and produces gene hit rankings with effect sizes and FDR. Use for new knockout, CRISPRi, or CRISPRa screen analysis, enrichment or depletion contrasts, and MAGeCK count/test workflows; existing public dependency-score lookup belongs to DepMap.TestingNo warnings★ 56.1K↓ —Also in 2 other repos
- pathmlK-Dense-AI/scientific-agent-skillsSupports local computational pathology research with PathML: slide loading and tiling, preprocessing and QC, h5path storage, multiplex quantification, spatial graphs, and bounded model inference. Use for whole-slide H&E, CODEX, Vectra, Mesmer, HoVer-Net, and HACTNet workflows.DocumentsNo warnings★ 56.1K↓ —Also in 2 other repos
pathogen-variant-surveillance
K-Dense-AI/scientific-agent-skills
ScienceUpdated 3 days ago
From the author
Queries public GenSpectrum LAPIS data for pathogen genomic surveillance, current lineage nomenclature, weekly sequence proportions, reporting delays, and descriptive mutation frequencies. Use for variant surveillance, Pango lineage validation, dominant submitted lineages, Nextclade assignment provenance, SARS-CoV-2, influenza/H5N1 clades, RSV, mpox, measles, dengue, or LAPIS queries. Distinguishes sequence prevalence from infection prevalence, clades from genotypes, missing calls from reference matches, and sampling changes from biological growth advantage.
Install
npx skills add K-Dense-AI/scientific-agent-skills --skill pathogen-variant-surveillance -a claude-code
Installs to .claude/skills/pathogen-variant-surveillance/ · Each command fetches the skill straight from GitHub with the open skills CLI.
Download .zip
Byte-identical to the scanned commit, with the repository’s licence and a SOURCE.txt.
What it can touch
Runs bundled scriptsNo network use seenLicence: MIT
Safety checks on SKILL.md
- Ships scripts we have not reviewedLow
Why 89
Security85
Provenance95
Maintenance100
Licence100
Adoption73
Files (9)
- SKILL.md
- references/lapis-api.md
- references/lineage-nomenclature.md
- references/surveillance-caveats.md
- scripts/lapis_client.py
- scripts/lineage_prevalence.py
- scripts/mutation_profile.py
- scripts/reporting_lag.py
- scripts/resolve_lineage.py