Agent skills you can check before you install
Public SKILL.md skills from GitHub repositories with 50+ stars and from the vendors themselves, scanned and scored. Install any of them with one command in Claude Code, Cursor, Codex, GitHub Copilot or Gemini CLI.
49,492 skills from 2,391 repositories · updated 18 hours ago
49,492 skills
- scenario-seedreamscenario-labs/skillsUse when generating or editing images with Seedream models on Scenario via MCP: text-to-image, image-to-image editing with reference images, posters or packaging with exact in-image text (non-Latin scripts too), subject-preserving edits, sets of related images in one run, editing a transparent asset without losing its alpha, or splitting an image into transparent PNG layers with Layerize. Keywords: Seedream 5.0 Pro, Lite, Flash, 4.5, Layerize, ByteDance, txt2img, img2img, layer extraction.MediaNo warnings★ 2.2K↓ —
- respond-to-refereespedrohcgs/claude-code-my-workflowGenerate a structured response-to-referees document from a referee report and the revised manuscript. Maps each referee comment to the specific revision, classifies coverage (addressed / partially / deferred / disagreement), and drafts polite but firm responses. Use during the R&R (revise-and-resubmit) stage of paper revision.ScienceNo warnings★ 1.7K↓ —
- differential-auditpedrohcgs/claude-code-my-workflowCompare two implementations of the same thing — a port (R↔Python↔Stata), a reimplementation, a replication package, a refactor, or a new version against the old — so that agreement means something. Freeze inputs first, inventory every expected output, test the comparator itself, compare every channel (not just the headline number), and give each divergence a stable ID and a smallest witness. Use for cross-language parity, replication, upgrade/regression gates, or whenever "the numbers match" is about to license a claim.TestingNo warnings★ 1.7K↓ —
- scaffold-exercisespedrohcgs/claude-code-my-workflowScaffold a graded problem set with sections, problems, worked solutions, and short "why this matters" explainers across analytical, empirical, and coding types. Use when user says "make a problem set on X", "scaffold exercises for this lecture", "create practice problems", "generate homework with a solution key", "build a graded assignment on topic Y". Emits a clean student set plus a separate solution key — NOT for grading submissions or auto-checking student answers.EngineeringNo warnings★ 1.7K↓ —
- architecture-optimizationwondelai/skillsGuided journey from a working codebase grown slow and tangled to one measurably fast, cleanly bounded, and readable. Orchestrates eight skills phase by phase - working-with-legacy-code, clean-architecture, software-design-philosophy, refactoring-patterns, system-design, ddia-systems, release-it, pragmatic-programmer - every phase carries its method inline so it runs standalone, asking the user questions at every decision point and recording results in the project docs/ folder (PERFORMANCE.md, ARCHITECTURE.md, ARCHITECTURE-OPTIMIZATION-PLAN.md) so the journey resumes across sessions. Use when the user wants to make an app faster, untangle drifted boundaries, fix slow endpoints and queries, or says 'it works but it is slow and getting worse'. For an untested prototype, improve-code-quality; for an aged codebase you fear to touch, remove-technical-debt; for greenfield structure, design-code-architecture; for marketing-site page speed, improve-website. For one framework in isolation, invoke that skill directly.PlanningNo warnings★ 2.6K↓ —Also in 2 other repos
- design-everyday-thingswondelai/skillsApply foundational design principles: affordances, signifiers, constraints, feedback, and conceptual models. Use when the user mentions "why is this confusing", "affordance", "error prevention", "discoverability", "human-centered design", "mental model", "mapping", "seven stages of action", "users keep making mistakes", "this is unintuitive", or "people cant figure out how to use it". Also trigger when reducing product complexity or feature creep. Covers the gulfs of execution and evaluation. For usability scoring, see ux-heuristics. For iOS-specific patterns, see ios-hig-design.DesignNo warnings★ 2.6K↓ —Also in 3 other repos
- teach-from-paperpedrohcgs/claude-code-my-workflowTurn a research paper into teaching materials — a lecture outline, the 3-5 results worth presenting (with intuition), a slide skeleton ready for `/create-lecture`, discussion questions, and a problem-set brief. Reads the paper end-to-end and pitches to a stated audience level. Use when user says "turn this paper into a lecture", "teach from this paper", "build slides from this PDF", "make teaching materials from X", "I'm presenting this paper to my class".ScienceNo warnings★ 1.7K↓ —
- obviously-awesomewondelai/skillsDefine product positioning by mapping competitive alternatives, unique attributes, and best-fit customers to the right market category. Use when the user mentions "positioning", "competitive alternatives", "how to position", "market category", "positioning canvas", "repositioning", "category creation", "what category are we in", or "why prospects dont get what we do". Also trigger when launching a new product, entering a crowded market, or diagnosing why prospects dont grasp the product's value. Covers the positioning canvas and team workshops. For customer jobs analysis, see jobs-to-be-done. For go-to-market, see crossing-the-chasm.OtherNo warnings★ 2.6K↓ —Also in 2 other repos
- r-package-checkpedrohcgs/claude-code-my-workflowRun the full R package release gate — regenerate docs, run the test suite, run R CMD check --as-cran, and triage every ERROR / WARNING / NOTE against CRAN policy before a release or submission. Use when the user says "check my R package", "R CMD check", "is this package CRAN-ready", "run devtools::check", "prepare for CRAN submission", or points at a directory containing a DESCRIPTION file. Produces a check report + CRAN-submission checklist in `quality_reports/`.TestingNo warnings★ 1.7K↓ —
- compress-sessionpedrohcgs/claude-code-my-workflowDistill the current conversation into a structured note (decisions made, open questions, file pointers with line numbers, next 1–3 actions) and save to `quality_reports/session_logs/` before auto-compression. Differs from `/checkpoint` (explicit stop-point snapshot) and from auto-compaction (which truncates rather than distills). Use when context is approaching auto-compact threshold, when a long pipeline has accumulated many decisions, or when the user says "compress", "distil this session", "before we hit auto-compact", "structured handoff before context resets".ProductivityNo warnings★ 1.7K↓ —
- refactoring-patternswondelai/skillsApply named refactoring transformations to improve code structure without changing behavior. Use when the user mentions "refactor this", "code smells", "extract method", "replace conditional", "technical debt", "move method", "inline variable", "decompose conditional", or "clean up this messy code". Also trigger when cleaning up legacy code, preparing code for new features by restructuring, or identifying which transformation fits a specific code smell. Covers smell-driven refactoring, safe transformation sequences, and testing guards. For code-quality foundations, see clean-code. For managing complexity, see software-design-philosophy.EngineeringNo warnings★ 2.6K↓ —Also in 2 other repos
- credible-claimspedrohcgs/claude-code-my-workflowResearch-brief + claim-record discipline for delegated or AI-assisted research work. Use when starting any substantive research task or long autonomous run (write the brief first), and when reporting results that will support a claim in a paper or decision (produce the claim record). Keeps faster execution from being confused with credible evidence.ScienceNo warnings★ 1.7K↓ —
- devils-advocatepedrohcgs/claude-code-my-workflowAdversarial 5-7 question challenge to a deck's pedagogical choices — ordering, prerequisites, cognitive load, motivation. Use when user says "devil's advocate", "poke holes in this deck", "push back on my slides", "stress-test the design", "what would a skeptical student ask?". Read-only; surfaces questions to force rethinking. Lighter than `/pedagogy-review`.TestingNo warnings★ 1.7K↓ —
- tilLeoYeAI/agent-master-skillsCapture and manage TIL (Today I Learned) entries on OpenTIL. Use /til <content> to capture, /til to extract insights from conversation, or /til list|publish|edit|search|delete|status|sync|tags|categories|batch to manage entries -- all without leaving the CLI.WritingNo warnings★ 2.2K↓ —
- oracle-reviewpedrohcgs/claude-code-my-workflowA ready-to-fork Claude Code template for academics using LaTeX/Beamer + R. Multi-agent review, quality gates, adversarial QA, and replication protocols.EngineeringNo warnings★ 1.7K↓ —
- voice-profilepedrohcgs/claude-code-my-workflowExtract a written voice profile from your own prior papers, then use it to keep new drafts sounding like you. Reads a corpus one document at a time via subagents, produces a reusable profile on disk (lexicon, sentence rhythm, how you open and close, hedging habits, deliberate quirks), and audits a draft against it. Use when the user says "make this sound like me", "match my voice", "profile my writing", "why does this draft not sound like my papers", or before drafting prose that will carry their name. The positive counterpart to /humanize, which only detects AI tells.WritingNo warnings★ 1.7K↓ —
- validate-bibpedrohcgs/claude-code-my-workflowValidate bibliography entries against citations in all lecture files. Structural checks (missing/unused entries, malformed fields) by default; `--semantic` adds citation-drift detection, DOI verification, and style-consistency checks.OtherNo warnings★ 1.7K↓ —
- blast-radiuspedrohcgs/claude-code-my-workflowBefore and after changing anything shared — a function's return value, a signature, a schema, a label set, a config default, a constant, a file format — find every consumer and actually run them. Catches the change that looks purely additive but silently breaks a contract in a file you never opened. Use when editing shared code, adding a field/column/return element, renaming, changing units or defaults, or touching a pipeline that produces reported numbers.LegalNo warnings★ 1.7K↓ —
- okrs-kanzleiKlotzkette/claude-fuer-deutsches-rechtFür OKR und Prioritäten: ordnet Norm, Beweislast und Gegenargument; Ergebnis: Prüfprodukt mit Risiko und nächstem Schritt.OtherNo warnings★ 1.8K↓ —
- new-diagrampedrohcgs/claude-code-my-workflowScaffold a new TikZ diagram from the snippet gallery with prevention rules pre-applied (explicit node dimensions, coordinate map, directional edge labels). Compiles standalone, invokes tikz-reviewer with citations from tikz-measurement.md, and loops on revisions until APPROVED.OtherNo warnings★ 1.7K↓ —
- qa-quartopedrohcgs/claude-code-my-workflowAdversarial Quarto-vs-Beamer parity QA. A critic agent compares the Quarto HTML render to the Beamer PDF benchmark for content/visual parity; a fixer agent applies fixes; loops until APPROVED or two consecutive rounds turn up nothing new (fallback cap 5 rounds). Use when user says "qa the quarto", "check parity", "does the html match the pdf?", "quarto matches beamer?", or after a translate-to-quarto run. Requires both the `.qmd` rendered and a `.pdf` benchmark.TestingNo warnings★ 1.7K↓ —
- statistical-powerK-Dense-AI/scientific-agent-skillsCalculates sample sizes and statistical power for study planning. Applies when someone asks "how many subjects/samples/replicates do I need", wants an a priori power analysis, a minimum detectable effect (MDE), a power curve, or needs to justify a sample size for a grant, IRB protocol, or pre-registration. Covers closed-form power for t-tests, ANOVA, proportions, correlations, chi-square, and regression, plus simulation-based (Monte Carlo) power for complex designs — logistic/Poisson regression, mixed models, cluster-randomized trials, survival, and interactions. Also handles requests that only mention an effect size, alpha, or "80% power" without saying "power analysis" explicitly. For laying out the study (randomization, blocking, factorial/DOE, crossover, sequential designs) use experimental-design; for analyzing data already collected and reporting it use statistical-analysis.TestingNo warnings★ 56.1K↓ —
- syllabuspedrohcgs/claude-code-my-workflowBuild or restructure a course syllabus from a topic list or reading list — course description + prerequisites, week-by-week schedule (topic → readings → deliverables), measurable learning objectives, an assessment scheme + rubric, standard policies (late work, AI use, academic integrity, accessibility), and a per-week work-list to hand to `/create-lecture`. Use when user says "build a syllabus", "structure my course", "turn this reading list into a schedule", "draft a course outline", "make a syllabus for Econ 7xx", or "map weeks to lectures". Economics-aware (PhD metrics/micro/macro sequences, undergrad); generic enough for any field.OtherNo warnings★ 1.7K↓ —
- diagnosepedrohcgs/claude-code-my-workflowA ready-to-fork Claude Code template for academics using LaTeX/Beamer + R. Multi-agent review, quality gates, adversarial QA, and replication protocols.TestingNo warnings★ 1.7K↓ —
pysam
K-Dense-AI/scientific-agent-skills
ScienceUpdated 3 days ago
From the author
Provides Python/HTSlib workflows for genomic files. Used when reading, querying, filtering, or writing SAM/BAM/CRAM, VCF/BCF, FASTA/FASTQ, or tabix data with pysam, including pileup, coverage, indexing, and CRAM references.
Install
npx skills add K-Dense-AI/scientific-agent-skills --skill pysam -a claude-code
Installs to .claude/skills/pysam/ · Each command fetches the skill straight from GitHub with the open skills CLI.
Download .zip
Byte-identical to the scanned commit, with the repository’s licence and a SOURCE.txt.
What it can touch
Runs bundled scriptsUses the networkLicence: MIT
Safety checks on SKILL.md
- Ships scripts we have not reviewedLow
Why 89
Security85
Provenance95
Maintenance100
Licence100
Adoption73
Files (14)
- SKILL.md
- references/alignment_files.md
- references/api_reference.md
- references/common_workflows.md
- references/coordinates_and_indexing.md
- references/cram_and_performance.md
- references/migration_to_0_24.md
- references/sequence_files.md
- references/sources.md
- references/variant_files.md
- scripts/alignment_qc.py
- scripts/filter_alignments.py
- +2 more