Agent skills you can check before you install
Public SKILL.md skills from GitHub repositories with 50+ stars and from the vendors themselves, scanned and scored. Install any of them with one command in Claude Code, Cursor, Codex, GitHub Copilot or Gemini CLI.
49,492 skills from 2,391 repositories · updated 14 hours ago
49,492 skills
- pydeseq2K-Dense-AI/scientific-agent-skillsPerforms bulk RNA-seq differential expression analysis with PyDESeq2, including count validation, formula designs, explicit contrasts, Wald tests, FDR correction, coefficient-matched LFC shrinkage, and result visualization. Use for PyDESeq2 or Python DESeq2 workflows with biological replicates.TestingNo warnings★ 56.1K↓ —Also in 1 other repo
- capture-environmentpedrohcgs/claude-code-my-workflowSnapshot the computational environment for a replication package — detects the analysis stack (R / Stata / Python) and emits the right lockfiles (renv.lock + sessionInfo.txt, requirements.txt / environment.yml / uv.lock, Stata version + ado package list), records seeds and RNG kind, optionally writes a pinning Dockerfile, and produces a paste-ready "Computational requirements" block. Use when user says "capture the environment", "snapshot my dependencies", "pin the versions", "make a renv.lock / requirements.txt", "make this byte-reproducible", or before releasing a replication package to openICPSR / the AEA Data Editor.WritingNo warnings★ 1.7K↓ —
- typeuibergside/typeuiUse TypeUI with Hermes Agent to access project design skills, brand kits, UI prompts, and layout variations through the TypeUI MCP server when creating or refining user interfaces.DesignNo warnings★ 2.2K↓ —
- learning-materials-designcbrock84/headcountDesigns worksheets, workbooks and practice material that actually teach — sequencing difficulty, managing cognitive load, writing instructions a child can follow unaided, and building answer keys that hold up. Use this to design or fix a worksheet or workbook, decide how much practice a skill needs, structure a page so it can be completed without an adult reading it aloud, or diagnose material that looks right and does not work.DesignNo warnings★ 2.6K↓ —
- cameraxandroid/skillsProvide technical guidance for Android camera development with CameraX. Use when implementing camera features, handling asynchronous recording lifecycles, wiring low-level hardware interop using CameraX, or integrating ML Kit or Media3 effects.OfficialOtherNo warnings★ 10.3K↓ —
- scenario-seedance-storyboardscenario-labs/skillsUse when a Seedance video must hold continuous movement across shots: dance choreography, fights, sports, or any performance where limbs teleport, feet slide, or motion resets at every cut, or when turning a storyboard and character sheet into a multi-shot sequence that plays as one take. Keywords: storyboard to video, choreography, movement control, pose chain, timecoded shot script, first and last frame chaining, character sheet, multi-shot continuity, Seedance 2.5 and 2.0.DocumentsNo warnings★ 2.2K↓ —
- networkxK-Dense-AI/scientific-agent-skillsCreates, analyzes, and visualizes complex networks and graphs in Python with NetworkX. Use when working with network/graph data structures, computing graph algorithms (shortest paths, centrality, clustering), detecting communities, generating synthetic networks (random, scale-free, small-world), reading/writing graph file formats, or drawing network topologies. Common applications include social, biological, transportation, and citation networks.ScienceNo warnings★ 56.1K↓ —Also in 1 other repo
- output-waehlenKlotzkette/claude-fuer-deutsches-rechtFür Output wählen: ordnet Norm, Beweislast und Gegenargument; Ergebnis: Prüfprodukt mit Risiko und nächstem Schritt. Fachgebiet: Technik-Governance.OtherNo warnings★ 1.8K↓ —
- rei-vindicatioKlotzkette/claude-fuer-deutsches-rechtFür Rei Vindicatio: ordnet Norm, Beweislast und Gegenargument; Ergebnis: Prüfprodukt mit Risiko und nächstem Schritt.OtherNo warnings★ 1.8K↓ —
- iam-helper-for-troubleshootinggoogle/skillsDiagnoses, remediates, and manages Identity and Access Management (IAM) access issues on Google Cloud. Supports two distinct operational modes: (1) Requester Flow for developers encountering access denials (capturing error context, self-service PAM JIT activations, elevated developer self-remediation, or logging structured tickets), and (2) Resolver Flow for privileged administrators (authoritative Policy Troubleshooter analysis, deny policy exemptions, least-privilege role discovery, and PAM/IAM provisioning).OfficialProductivityNo warnings★ 21.9K↓ —
- pedagogy-reviewpedrohcgs/claude-code-my-workflowHolistic pedagogical review of a lecture deck (`.qmd` or `.tex`). Checks narrative arc, prerequisite assumptions, worked examples, notation clarity, and deck-level pacing. Use when user says "pedagogy review", "does this teach well?", "is the flow right?", "will students follow?", "review the narrative", or before teaching a deck for the first time. Read-only; produces a report.EngineeringNo warnings★ 1.7K↓ —
- seedance-meme-comedyLearnPrompt/awesome-seedanceA short skit where every beat is laid down to serve one punchline. The joke has to land on something visible, and the absurdity only works when the camera and the physics stay dead serious. Use when the user wants a Seedance 2.5 / 2.0 video prompt for this kind of clip (Twist-ending comedy skit; 中文触发词: 反转结尾搞笑短片, 搞笑, 反转, 梗, 沙雕), or asks how published cases of this type were prompted. Read references/cases.md before drafting.MediaNo warnings★ 2.4K↓ —
- production-managementcbrock84/headcountRuns the production schedule — sequencing and releasing work, managing work in process and changeovers, and holding the promised date when the floor and the order book disagree. Use this to build or fix a production schedule, decide what to run next, diagnose why lead times are growing while machines look busy, set up OEE or throughput measurement, or choose between make-to-stock and make-to-order for a product line.FinanceNo warnings★ 2.6K↓ —
- benefits-realizationcbrock84/headcountEnsures projects deliver the value they were approved on — defining measurable benefits, baselining, tracking after delivery, and honest post-implementation review. Use this to define benefits for a business case, set a baseline, track whether value actually landed, or run a post-implementation review that produces something useful.EngineeringNo warnings★ 2.6K↓ —
- find-hypertable-candidatestimescale/pg-aiguideUse this skill to analyze an existing PostgreSQL database and identify which tables should be converted to Timescale/TimescaleDB hypertables. **Trigger when user asks to:** - Analyze database tables for hypertable conversion potential - Identify time-series or event tables in an existing schema - Evaluate if a table would benefit from Timescale/TimescaleDB - Audit PostgreSQL tables for migration to Timescale/TimescaleDB/TigerData - Score or rank tables for hypertable candidacy **Keywords:** hypertable candidate, table analysis, migration assessment, Timescale, TimescaleDB, time-series detection, insert-heavy tables, event logs, audit tables Provides SQL queries to analyze table statistics, index patterns, and query patterns. Includes scoring criteria (8+ points = good candidate) and pattern recognition for IoT, events, transactions, and sequential data.DataNo warnings★ 1.9K↓ —
- scenario-blenderscenario-labs/skillsUse when an agent works in an open Blender scene through the Scenario for Blender extension's local MCP server (scenario-blender on 127.0.0.1:9876): connecting Claude Code, Cursor, Claude Desktop or Codex to Blender, the headless scenario_blender command, quoting and generating Scenario images, PBR materials, 3D meshes, video, audio or 360 environments from the scene, capturing the viewport or selected meshes as references, placing saved results, Render Video camera paths, or execute_python.MediaNo warnings★ 2.2K↓ —
- archify-tuningtt-a1i/archifyImprove Archify diagram accuracy, visual quality and complete authoring speed with fewer repairs. Use for generation experiments or evaluating changes to layout, routing, diagnostics, authoring instructions and acceptance rules against actual diagrams and agent traces.OtherNo warnings★ 93.3K↓ —
- add-new-opc-skillReScienceLab/opc-skillsChecklist and automation guide for adding a new skill to the OPC Skills project. Ensures all required files, metadata, logos, and listings are created before release. Use when adding a new skill, publishing a skill, or preparing a skill for release.OtherNo warnings★ 1.9K↓ —
- research-with-sourcesinkeep/open-knowledgeInvestigate a topic against preserved sources and write a draft-status research article under `research/` in a Knowledge Base project (the `knowledge-base` starter pack). Read when asked to research a topic, compare options, synthesize sources, gather evidence, or extend an existing research doc. Carries the full procedure: scan existing coverage, agree a research rubric, capture every source verbatim before analyzing, write the article incrementally so a crash never loses work, cite every claim, and link it back into the graph. Does not promote findings to canonical knowledge — that is the sibling `consolidate-notes` skill, after a decision lands.ScienceNo warnings★ 4.8K↓ —
- subunternehmerKlotzkette/claude-fuer-deutsches-rechtFür Subunternehmer: ordnet Norm, Beweislast und Gegenargument; Ergebnis: Prüfprodukt mit Risiko und nächstem Schritt. Fachgebiet: AGB-Recht-Prüfer. Route: subunternehmer.OtherNo warnings★ 1.8K↓ —
- blog-factcheckAgriciDaniel/claude-blogVerify statistics and claims in blog posts by fetching cited source URLs and checking if the claimed data actually appears on the page. Extracts all load-bearing claims (statistics, product or policy claims, ranking and comparative claims, named sources), validates cited URLs before fetching, and scores match confidence (exact match 1.0, paraphrase 0.7-0.9, not found 0.0). Flags uncited claims as UNVERIFIED and marks a claim verified only when this run fetched the source and found the passage. Checks that a source says what the post says it says; it cannot prove the source is true or verify first-hand experience. Use when the user says "fact check", "verify statistics", "check sources", "factcheck". Report only; not for rewriting posts (blog-rewrite).WritingNo warnings★ 2.6K↓ —
- chronologieKlotzkette/claude-fuer-deutsches-rechtFür Sachverhalts-Chronologie: ordnet Norm, Beweislast und Gegenargument; Ergebnis: Chronologie mit Beleg- und Widerspruchsmatrix.OtherNo warnings★ 1.8K↓ —
- scenario-ugcscenario-labs/skillsUse when producing UGC-style creator video with Scenario: a talking-head ad or testimonial from a portrait and a script, a founder clip, a product demo or unboxing, a reaction or before-after cut, a faceless voiceover over b-roll, or vertical social video for TikTok, Reels, or Shorts that must feel filmed on a phone rather than produced. Keywords: UGC, creator ad, talking head, testimonial, avatar, lipsync, founder video, social proof, faceless voiceover, organic, vertical video.MediaNo warnings★ 2.2K↓ —
- huashu-video-checkalchaincyf/huashu-skills基于MrBeast策略检查视频标题、封面和开头钩子。当用户提到"视频标题"、"封面图"、"点击率"、"CTR"、"观看时长"时使用。MediaNo warnings★ 2.2K↓ —
bulk-rnaseq
K-Dense-AI/scientific-agent-skills
ScienceUpdated 3 days ago
From the author
Prepares bulk RNA-seq FASTQ, Salmon, STAR or featureCounts output for gene-level differential expression. Covers nf-core/rnaseq and standalone quantification, biological replication, strandedness, reference provenance, validated count assembly and a PyDESeq2 handoff. Use for FASTQ-to-counts analysis, nf-core/rnaseq configuration, STAR/Salmon quantification, or building a counts matrix for DESeq2. For single-cell data use scanpy; for statistical fitting alone use pydeseq2.
Install
npx skills add K-Dense-AI/scientific-agent-skills --skill bulk-rnaseq -a claude-code
Installs to .claude/skills/bulk-rnaseq/ · Each command fetches the skill straight from GitHub with the open skills CLI.
Download .zip
Byte-identical to the scanned commit, with the repository’s licence and a SOURCE.txt.
What it can touch
Runs bundled scriptsUses the networkLicence: MIT
Safety checks on SKILL.md
- Ships scripts we have not reviewedLow
Why 89
Security85
Provenance95
Maintenance100
Licence100
Adoption73
Files (8)
- SKILL.md
- references/counts-and-handoff.md
- references/design-and-qc.md
- references/upstream-manual.md
- references/upstream-nfcore.md
- scripts/_tabular.py
- scripts/build_counts_matrix.py
- scripts/validate_samplesheet.py