Agent skills you can check before you install
Public SKILL.md skills from GitHub repositories with 50+ stars and from the vendors themselves, scanned and scored. Install any of them with one command in Claude Code, Cursor, Codex, GitHub Copilot or Gemini CLI.
48,168 skills from 2,325 repositories · updated 19 hours ago
47,055 skills
- exploratory-data-analysisK-Dense-AI/scientific-agent-skillsPerforms bounded, local exploratory analysis of explicitly supported scientific files. Supports redacted CSV/TSV/JSON profiles; optional NumPy, HDF5, FASTA/FASTQ, and basic image metadata inspection; missingness/leakage audits; outlier and transformation sensitivity; and rigorous EDA report scaffolds. Other domain formats are reference-only and unknown formats fail closed.DataNo warnings★ 55.5K↓ —
- fundraising-and-investor-relationscbrock84/headcountRaises capital and manages the relationship afterward — deciding how much and why, understanding what dilution and preferences actually cost, running a process with real competitive tension, preparing for diligence before it starts, and reporting to investors and a board in a way that keeps support when results are bad. Use this to plan a raise, evaluate a term sheet beyond the valuation, prepare a data room, or fix reporting that is producing surprises.FinanceNo warnings★ 2.5K↓ —
- autoskillK-Dense-AI/scientific-agent-skillsAnalyzes user-requested Screenpipe history windows to detect repeated research workflows, match existing scientific skills, and stage new skill drafts or composition recipes for review. Requires a reachable Screenpipe HTTP API, normally on localhost:3030. Detection and embedding inference run locally; the selected LLM receives redacted app/title cluster summaries and matched skill descriptions. Use only when the user explicitly asks to analyze their recent work and propose skills.ScienceNo warnings★ 55.5K↓ —Also in 1 other repo
- claude-reflectBayramAnnakov/claude-reflectSelf-learning system that captures corrections during sessions and reminds users to run /reflect to update CLAUDE.md. Use when discussing learnings, corrections, or when the user mentions remembering something for future sessions.OtherNo warnings★ 1.9K↓ —
- onekgpdK-Dense-AI/scientific-agent-skillsQueries the 1000 Genomes Project dataset (3,202 whole-genome-sequenced individuals, GRCh38) at the level of individual participants. Use when a question is about individuals or variants in the 1000 Genomes Project cohort: which individuals carry variants matching specific criteria in a gene or region, which individuals are homozygous-reference at a position, which variants exist in the dataset or carried by specified individuals in a gene or region, the relatedness between two specified individuals. Variants are returned with 1000 Genomes allele frequencies (AF), gnomAD v4.1 exome and genome AF, AlphaMissense score, and HGVSp annotations.ScienceNo warnings★ 55.5K↓ —Also in 1 other repo
- networkxK-Dense-AI/scientific-agent-skillsCreates, analyzes, and visualizes complex networks and graphs in Python with NetworkX. Use when working with network/graph data structures, computing graph algorithms (shortest paths, centrality, clustering), detecting communities, generating synthetic networks (random, scale-free, small-world), reading/writing graph file formats, or drawing network topologies. Common applications include social, biological, transportation, and citation networks.ScienceNo warnings★ 55.5K↓ —Also in 1 other repo
- market-research-reportsK-Dense-AI/scientific-agent-skillsBuilds evidence-traceable market research reports and assumption-driven market sizing or forecast scenarios. Use for market definition, industry and customer evidence, competitive landscapes, TAM/SAM/SOM reconciliation, forecast sensitivity, and auditable report scaffolds.ScienceNo warnings★ 55.5K↓ —
- sigma_ingestKaelio/ktxExtract durable ktx wiki knowledge from staged Sigma data model specs and workbook summaries. Load for WorkUnits with unitKey sigma-data-models or sigma-workbooks.PlanningNo warnings★ 1.6K↓ —
- detection-and-monitoringcbrock84/headcountBuilds the capability to notice an attack in progress — deciding what to log and retain, centralizing it somewhere tamper-resistant, writing detections that fire on attacker behavior rather than on individual events, tuning out the noise that trains people to ignore alerts, and defining what happens when something fires. Use this to design or assess monitoring coverage, work out why an incident went unnoticed, cut alert volume without losing signal, or decide what a detection capability should cost.DesignNo warnings★ 2.5K↓ —
- looker_ingestKaelio/ktxExtract durable ktx knowledge and semantic-layer contribution proposals from staged Looker runtime dashboard, Look, and explore JSON. Load for WorkUnits whose raw files are under explores/, dashboards/, or looks/.OtherNo warnings★ 1.6K↓ —
- sl_captureKaelio/ktxHow to capture new reusable patterns into ktx's semantic layer - when a measure, segment, or join belongs in the catalog and how to write it generically so it stays small and useful over time. Loaded by the post-turn memory-agent only. The research agent does not write to the SL.ScienceNo warnings★ 1.6K↓ —
- ingest_triageKaelio/ktxClassify and resolve conflicts detected during bundle ingest (structural duplicates, definitional contradictions, near-duplicate clusters, re-ingest changes, evictions).OtherNo warnings★ 1.6K↓ —
- genimlK-Dense-AI/scientific-agent-skillsSupports audited local Geniml genomic-interval workflows: validate BED and universe contracts, plan Region2Vec or scEmbed runs, inspect model/tokenizer compatibility, and assess consensus universes.ScienceNo warnings★ 55.5K↓ —Also in 1 other repo
- slKaelio/ktxktx's semantic layer - a structured catalog of sources (tables/views), measures, joins, and segments expressed as YAML. Covers the schema and how to query it via `sl_query`. Use when the task involves querying pre-defined metrics (ARR, churn, retention, LTV, MAU) or reading SL source YAML to understand the catalog. Capture is handled by the `sl_capture` skill (memory-agent only).ProductivityNo warnings★ 1.6K↓ —
- parallel-agent-deliverycbrock84/headcountSplits work across multiple agents or sessions running at once, keeping their surfaces disjoint so results merge cleanly. Use this when facing several independent tasks with no shared state, when a plan has parallelizable steps, when a broad search or audit would be faster fanned out, or when deciding whether work can safely be split at all.PlanningNo warnings★ 2.5K↓ —
- hivemind-memoryactiveloopai/hivemindGlobal team and org memory powered by Activeloop. ALWAYS check BOTH built-in memory AND Hivemind memory when recalling information.ProductivityNo warnings★ 1.6K↓ —
- spark-training-gotchaswshobson/agentsPreflight and diagnose the ten known failure modes for ML training on NVIDIA DGX Spark. Use when a training run on DGX Spark fails to start, OOMs below the 128GB limit, slows down mid-run, or before any multi-hour training job on GB10.OtherNo warnings★ 42K↓ —
- hivemind-memoryactiveloopai/hivemindGlobal team and org memory powered by Activeloop. ALWAYS check BOTH built-in memory AND Hivemind memory when recalling information.ProductivityNo warnings★ 1.6K↓ —
- hivemind-graphactiveloopai/hivemindQuery the local code graph (functions, classes, calls, imports) through the Deeplake mount at memory/graph/. Use when the user asks structural questions about the codebase — "what calls X?", "what does Y import?", "where is Z defined?", "what is the architecture / which subsystems exist?". The graph is an AST-derived map of the repo, queried as files (no build needed — it rebuilds automatically).PlanningNo warnings★ 1.6K↓ —
- hivemindactiveloopai/hivemindGlobal team and org memory powered by Activeloop. ALWAYS check BOTH built-in memory AND Hivemind memory when recalling information.ProductivityNo warnings★ 1.6K↓ —
- hivemind-goalsactiveloopai/hivemindCreate, track and update team goals via the Deeplake virtual filesystem at memory/goal/. Use whenever the user mentions a goal, objective, target, milestone, or asks to track progress on something measurable. ALSO use when the user says "task", "todo", "work item", "remind me to", "fix X", or any actionable work item — the goal system replaced the legacy `hivemind tasks` CLI and now covers both objectives and tasks.EngineeringNo warnings★ 1.6K↓ —
- agent-orchestrationcodeaholicguy/ai-devkitAI DevKit · Supervise multi-agent workflows over repeated passes: poll progress, unblock waiting agents, coordinate dependencies, relay outputs, resolve conflicts, and verify completion. Use only for ongoing multi-agent coordination, not one-off list/detail/send/start/kill actions.OtherNo warnings★ 1.7K↓ —
- agent-communicationcodeaholicguy/ai-devkitAI DevKit · Exchange information with active Codex, Claude Code, and other AI agents using ai-devkit agent list, detail, and send. Use when an agent needs to find another active agent, read its recent context, send it information, or request information back.EngineeringNo warnings★ 1.7K↓ —
- dev-implementationcodeaholicguy/ai-devkitAI DevKit · Implementation phase guidance for executing feature plans and checking implementation against design. Use when the user wants to implement planned tasks, update implementation docs, verify code matches design, or run dev-lifecycle phases 5 and 7.DesignNo warnings★ 1.7K↓ —
pathogen-variant-surveillance
K-Dense-AI/scientific-agent-skills
ScienceUpdated 6 days ago
From the author
Queries public GenSpectrum LAPIS data for pathogen genomic surveillance, current lineage nomenclature, weekly sequence proportions, reporting delays, and descriptive mutation frequencies. Use for variant surveillance, Pango lineage validation, dominant submitted lineages, Nextclade assignment provenance, SARS-CoV-2, influenza/H5N1 clades, RSV, mpox, measles, dengue, or LAPIS queries. Distinguishes sequence prevalence from infection prevalence, clades from genotypes, missing calls from reference matches, and sampling changes from biological growth advantage.
Install
npx skills add K-Dense-AI/scientific-agent-skills --skill pathogen-variant-surveillance -a claude-code
Installs to .claude/skills/pathogen-variant-surveillance/ · Each command fetches the skill straight from GitHub with the open skills CLI.
Download .zip
Byte-identical to the scanned commit, with the repository’s licence and a SOURCE.txt.
What it can touch
Runs bundled scriptsNo network use seenLicence: MIT
Safety checks on SKILL.md
- Ships scripts we have not reviewedLow
Why 89
Security85
Provenance95
Maintenance100
Licence100
Adoption73
Files (9)
- SKILL.md
- references/lapis-api.md
- references/lineage-nomenclature.md
- references/surveillance-caveats.md
- scripts/lapis_client.py
- scripts/lineage_prevalence.py
- scripts/mutation_profile.py
- scripts/reporting_lag.py
- scripts/resolve_lineage.py