Agent skills you can check before you install
Public SKILL.md skills from GitHub repositories with 50+ stars and from the vendors themselves, scanned and scored. Install any of them with one command in Claude Code, Cursor, Codex, GitHub Copilot or Gemini CLI.
49,492 skills from 2,391 repositories · updated 12 hours ago
49,492 skills
- pathogen-variant-surveillanceK-Dense-AI/scientific-agent-skillsQueries public GenSpectrum LAPIS data for pathogen genomic surveillance, current lineage nomenclature, weekly sequence proportions, reporting delays, and descriptive mutation frequencies. Use for variant surveillance, Pango lineage validation, dominant submitted lineages, Nextclade assignment provenance, SARS-CoV-2, influenza/H5N1 clades, RSV, mpox, measles, dengue, or LAPIS queries. Distinguishes sequence prevalence from infection prevalence, clades from genotypes, missing calls from reference matches, and sampling changes from biological growth advantage.ScienceNo warnings★ 56.1K↓ —
- ai-mdLeoYeAI/agent-master-skillsAI.MD — Convert any human-written CLAUDE.md into AI-native structured format. Your CLAUDE.md is read by AI every single turn, not by you — so write it in AI's language. Battle-tested: 5 rounds, 4 models (GPT-5.3, Gemini 2.5 Pro, Grok-4, Claude Opus 4.6). Structured-label format raised Codex compliance from 6/8 → 8/8 on identical content. Same rules, fewer tokens, higher precision. This skill contains the complete methodology: how to take natural language instructions and convert them into a format that LLMs actually follow better. Run with: "distill my CLAUDE.md" or "rewrite my MD for AI" or "蒸餾" or "AI.MD"LegalNo warnings★ 2.2K↓ —
- scientific-brainstormingK-Dense-AI/scientific-agent-skillsFacilitates evidence-aware scientific ideation with independent generation, structured discussion, explicit assumptions, transparent evaluation, adversarial review, and decision logs. Use for early-stage research brainstorming or prioritizing candidate directions; hand off empirical validation, study design, ethics or regulatory review, and clinical questions to appropriate experts or skills.ScienceNo warnings★ 56.1K↓ —
- cold-start-problemwondelai/skillsStart and scale networked products using Andrew Chen's "The Cold Start Problem" framework for network effects. Use when the user mentions "network effects", "chicken and egg", "cold start", "two-sided marketplace", "atomic network", "hard side", "liquidity", "critical mass", "invite-only launch", "how do I get my first users", or "the marketplace has no buyers or sellers". Also trigger when launching a marketplace, social, or collaboration product that is worthless without other users, deciding launch sequencing and seeding tactics, or diagnosing stalled network growth at scale. Covers the five stages: cold start, tipping point, escape velocity, hitting the ceiling, and the moat. For word-of-mouth virality, see contagious. For habit-driven retention, see hooked-ux.DesignNo warnings★ 2.6K↓ —Also in 2 other repos
- one-page-marketingwondelai/skillsBuild a complete marketing plan covering the full customer journey from stranger to raving fan. Use when the user mentions "marketing plan", "marketing strategy", "target market", "USP", "lead nurture", "customer lifetime value", "PVP Index", or "I dont know where to start with marketing". Also trigger when building a marketing plan from scratch, choosing acquisition channels, or designing end-to-end customer-lifecycle campaigns. Covers the PVP Index, channel selection, and advocacy systems. For brand messaging, see storybrand-messaging. For conversion optimization, see cro-methodology.MarketingNo warnings★ 2.6K↓ —Also in 2 other repos
- dbt-sf-to-bq-translatorgoogle/skillsTranslates Snowflake dbt SQL models to Standardized BigQuery SQL. Handles SQL compilation, Jinja macro placeholder masking, BigQuery Translation Service migration workflows, AST-based config transformations, explicit type casting, JSON extraction standardization, and deduplication. Use when migrating Snowflake dbt pipelines or models to BigQuery on Google Cloud. Don't use for generic BigQuery queries or non-Snowflake SQL migrations.OfficialDataNo warnings★ 21.9K↓ —
- scientific-schematicsK-Dense-AI/scientific-agent-skillsGenerates scientific diagram drafts using Nano Banana 2 AI with smart iterative refinement. Uses Gemini 3.7 Flash for quality review. Refines when the review requests improvement, with at most two generations. Specialized in neural network architectures, system diagrams, flowcharts, biological pathways, and complex scientific visualizations.ScienceNo warnings★ 56.1K↓ —
- canteraK-Dense-AI/scientific-agent-skillsRuns Cantera homogeneous chemical reactors and evaluates ignition delay with mechanism provenance, conservation checks, and numerical refinement. Use for combustion kinetics, closed adiabatic ideal-gas constant-volume or constant-pressure ignition, temperature histories, or mechanism-specific ignition-delay comparisons.ScienceNo warnings★ 56.1K↓ —Also in 2 other repos
- atelier-agent-integrationLeoYeAI/agent-master-skillsRegister as an autonomous agent on Atelier (atelierai.xyz), create content services, poll for paid orders, generate and deliver results, and earn USDC on Solana — fully autonomous. Use when asked to join Atelier, sell content, list services, check orders, deliver work, launch a token, or earn crypto as a creative agent.FinanceNo warnings★ 2.2K↓ —
- prompt-optimizercbrock84/headcountTurns rough intent or a weak prompt into a reliable one — diagnosing why output is inconsistent, restructuring the instruction, and adapting it across models. Use this when a prompt is not producing what was wanted, when output varies run to run, when writing a prompt for a repeated task, when moving a prompt between models, or when someone describes what they want an AI to do and needs it written properly.WritingNo warnings★ 2.6K↓ —
- scholar-evaluationK-Dense-AI/scientific-agent-skillsProvides qualitative-first, evidence-traceable developmental review of scholarly works and audit low-stakes research-assessment rubrics with optional local quality controls. Never use for ranking people or consequential decisions.ScienceNo warnings★ 56.1K↓ —
- nmrglueK-Dense-AI/scientific-agent-skillsProcesses calibrated one-dimensional complex NMR free-induction decays with nmrglue into phased spectra, peak candidates, and signed integration regions. Use for raw 1D NMR processing, ppm-axis verification, apodization, Fourier transformation, manual phasing, baseline correction, or reproducible spectral integration.PlanningNo warnings★ 56.1K↓ —Also in 2 other repos
- flowkitK-Dense-AI/scientific-agent-skillsAnalyzes flow cytometry data with FlowKit, including spillover compensation, logicle and biexponential transforms, hierarchical gating, GatingML strategies, and supported FlowJo 10 workspaces. Use for reproducible gate counts, population percentages, gated fluorescence summaries, or reproducing a FlowJo analysis in Python. For FCS metadata inspection or file-format repair alone, use FlowIO.EngineeringNo warnings★ 56.1K↓ —Also in 2 other repos
- analytical-method-validationK-Dense-AI/scientific-agent-skillsPlans, executes, and documents validation, verification, and transfer of analytical procedures under the governing framework - ICH Q2(R2) and Q14, USP <1220>/<1225>/<1226>, ICH M10 bioanalytical, CLSI EP, or ISO/IEC 17025. Use for HPLC, LC-MS/MS, GC, CE, ICP-MS, dissolution, qNMR, qPCR, NIR, and ligand binding or cell-based assays whenever the question is whether a procedure is fit for its intended purpose. Triggers include "method validation", "analytical method validation", "AMV", "validation protocol", "acceptance criteria", "linearity", "reportable range", "accuracy and precision", "repeatability", "intermediate precision", "recovery", "LOD", "LOQ", "detection limit", "quantitation limit", "specificity", "robustness", "method transfer", "method comparison", "Deming", "Passing-Bablok", "Bland-Altman", "equivalence testing", "OOS investigation", "ICH Q2", "Q2(R2)", "Q14", "USP 1225", "ICH M10", "incurred sample reanalysis", "ISR", "CLSI EP", and any request to show that an assay works.TestingNo warnings★ 56.1K↓ —
- relionK-Dense-AI/scientific-agent-skillsValidates and executes RELION single-particle cryo-EM refinement and half-map postprocessing. Supports STAR optics/acquisition checks, particle-stack consistency, gold-standard half sets, soft-mask validation, diagnostic Fourier shell correlation, and restart guidance.OtherNo warnings★ 56.1K↓ —Also in 2 other repos
- estimating-and-contingencycbrock84/headcountProduces a cost or effort estimate someone can defend — decomposing the work, choosing between analogous, parametric and bottom-up methods, documenting the basis and its assumptions, expressing confidence as a range, and sizing contingency and management reserve separately. Use this to build an estimate, challenge one you have been handed, work out why estimates keep coming in low, or decide how much reserve a portfolio actually needs.OtherNo warnings★ 2.6K↓ —
- ast-grepcode-yeongyu/oh-my-openagentSearches and rewrites code by AST shape across 25 languages. Use when the target is a syntax pattern (every call/class/import shaped like X, a codemod, a YAML rule) rather than literal text; for plain strings, comments, or filenames, use rg.EngineeringNo warnings★ 70.7K↓ —
- business-continuity-and-resiliencecbrock84/headcountPlans for operating through disruption — impact analysis, recovery objectives, continuity plans, and the exercises that prove they work. Use this to run a business impact analysis, set RTO and RPO, write or test a continuity plan, prepare for a supplier or site failure, or answer a customer's resilience questionnaire.TestingNo warnings★ 2.6K↓ —
- 13c-metabolic-fluxK-Dense-AI/scientific-agent-skillsEstimates intracellular metabolic fluxes from steady-state carbon-13 isotope-tracing measurements using validated atom maps, mfapy isotope simulation, constrained multistart fitting, and flux-profile diagnostics. Use for 13C-MFA, carbon tracing, mass isotopomer distributions (MDVs/MIDs), positional isotopomers, parallel tracer experiments, and determining whether labeling data constrain a pathway flux. Distinguishes measured-label inference from COBRA flux balance analysis and flags experiments requiring nonstationary MFA.OtherNo warnings★ 56.1K↓ —
- scanpyK-Dense-AI/scientific-agent-skillsPerforms Scanpy single-cell RNA-seq QC, normalization, HVG selection, PCA/UMAP/t-SNE, clustering, exploratory marker ranking, pseudobulk preparation, visualization, and Seurat or SingleCellExperiment RDS conversion to h5ad. Applies to established exploratory scRNA-seq workflows with explicit count and expression provenance; complementary skills cover scvi-tools models and AnnData format details.MarketingNo warnings★ 56.1K↓ —Also in 2 other repos
- generate-imageK-Dense-AI/scientific-agent-skillsGenerates or edits images with AI models through the OpenRouter Image API (Gemini, Seedream, Recraft, GPT-Image, Riverflow). Use for photos, illustrations, artwork, concept art, visual assets, logos, and image editing or compositing from reference images. For flowcharts, circuits, pathways, and other technical diagrams, use the scientific-schematics skill instead.MediaNo warnings★ 56.1K↓ —
- statistical-powerK-Dense-AI/scientific-agent-skillsCalculates sample sizes and statistical power for study planning. Applies when someone asks "how many subjects/samples/replicates do I need", wants an a priori power analysis, a minimum detectable effect (MDE), a power curve, or needs to justify a sample size for a grant, IRB protocol, or pre-registration. Covers closed-form power for t-tests, ANOVA, proportions, correlations, chi-square, and regression, plus simulation-based (Monte Carlo) power for complex designs — logistic/Poisson regression, mixed models, cluster-randomized trials, survival, and interactions. Also handles requests that only mention an effect size, alpha, or "80% power" without saying "power analysis" explicitly. For laying out the study (randomization, blocking, factorial/DOE, crossover, sequential designs) use experimental-design; for analyzing data already collected and reporting it use statistical-analysis.TestingNo warnings★ 56.1K↓ —
- readgzhLeoYeAI/agent-master-skillsReadGZH — Let AI read full-text WeChat Official Account articles. Supports standard articles and image-post formats.MediaNo warnings★ 2.2K↓ —
- qutipK-Dense-AI/scientific-agent-skillsSimulate and audit closed and open quantum-system models with QuTiP 5, including deterministic, trajectory, steady-state, spectral, and phase-space workflows. Use for local quantum-dynamics work where physical assumptions, dimensions, and numerical convergence must be explicit.PlanningNo warnings★ 56.1K↓ —Also in 2 other repos
scanpy
K-Dense-AI/scientific-agent-skills
MarketingUpdated 3 days ago
From the author
Performs Scanpy single-cell RNA-seq QC, normalization, HVG selection, PCA/UMAP/t-SNE, clustering, exploratory marker ranking, pseudobulk preparation, visualization, and Seurat or SingleCellExperiment RDS conversion to h5ad. Applies to established exploratory scRNA-seq workflows with explicit count and expression provenance; complementary skills cover scvi-tools models and AnnData format details.
Install
npx skills add K-Dense-AI/scientific-agent-skills --skill scanpy -a claude-code
Installs to .claude/skills/scanpy/ · Each command fetches the skill straight from GitHub with the open skills CLI.
Download .zip
Byte-identical to the scanned commit, with the repository’s licence and a SOURCE.txt.
What it can touch
Runs bundled scriptsUses the networkLicence: BSD-3-CLAUSE
Safety checks on SKILL.md
- Ships scripts we have not reviewedLow
Why 89
Security85
Provenance95
Maintenance100
Licence100
Adoption73
Files (26)
- SKILL.md
- assets/analysis_template.py
- assets/celltype_mapping.json
- assets/gene_signatures.json
- assets/pipeline_config.json
- references/analysis_workflow.md
- references/api_reference.md
- references/plotting_guide.md
- references/r_interop.md
- references/standard_workflow.md
- references/upstream-review.md
- scripts/_common.py
- +14 more