Agent skills you can check before you install
Public SKILL.md skills from GitHub repositories with 50+ stars and from the vendors themselves, scanned and scored. Install any of them with one command in Claude Code, Cursor, Codex, GitHub Copilot or Gemini CLI.
48,168 skills from 2,325 repositories · updated 11 hours ago
47,055 skills
- add-new-opc-skillReScienceLab/opc-skillsChecklist and automation guide for adding a new skill to the OPC Skills project. Ensures all required files, metadata, logos, and listings are created before release. Use when adding a new skill, publishing a skill, or preparing a skill for release.OtherNo warnings★ 1.9K↓ —
- anndataK-Dense-AI/scientific-agent-skillsHandles annotated matrices in single-cell analysis, .h5ad and Zarr files, and integration with the scverse ecosystem. This is the data format skill—for analysis workflows use scanpy; for probabilistic models use scvi-tools; for population-scale queries use cellxgene-census.OtherNo warnings★ 55.5K↓ —Also in 1 other repo
- omero-integrationK-Dense-AI/scientific-agent-skillsInspects and automates microscopy data workflows against OMERO.server with omero-py, BlitzGateway, OMERO CLI, tables, annotations, ROIs, rendering, and documented OMERO.web APIs. Use this skill for scoped OMERO inventory, metadata export, import/export planning, or reviewed write workflows.MediaNo warnings★ 55.5K↓ —
- datamolK-Dense-AI/scientific-agent-skillsPythonic wrapper around RDKit with simplified interface and sensible defaults. Preferred for standard drug discovery including SMILES parsing, standardization, descriptors, fingerprints, clustering, 3D conformers, parallel processing. Returns native rdkit.Chem.Mol objects. For advanced control or custom parameters, use rdkit directly.DesignNo warnings★ 55.5K↓ —Also in 1 other repo
- scikit-survivalK-Dense-AI/scientific-agent-skillsBuilds, evaluates, and audits right-censored or competing-risk survival workflows with scikit-survival, including leakage-safe preprocessing, model selection, probability prediction, and censoring-aware metrics.OtherNo warnings★ 55.5K↓ —
- matchmsK-Dense-AI/scientific-agent-skillsProcesses, cleans, compares, and searches tandem mass spectra with matchms. Use for MS/MS file I/O, metadata harmonization, peak filtering, spectral similarity, library matching, score matrices, and molecular-similarity networks. Use pyopenms instead for LC-MS feature detection or proteomics pipelines.PlanningNo warnings★ 55.5K↓ —Also in 1 other repo
- observability-and-reliabilitycbrock84/headcountMakes systems debuggable and reliably operable — instrumentation, alerting that is worth waking for, service objectives, and learning from failure. Use this to instrument a service, fix alerting that is ignored, set error budgets or reliability targets, prepare for on-call, or run a blameless post-incident review.DevOpsNo warnings★ 2.5K↓ —
- sandbox-npm-installgithub/awesome-copilotInstall npm packages in a Docker sandbox environment. Use this skill whenever you need to install, reinstall, or update node_modules inside a container where the workspace is mounted via virtiofs. Native binaries (esbuild, lightningcss, rollup) crash on virtiofs, so packages must be installed on the local ext4 filesystem and symlinked back.DevOpsNo warnings★ 40.6K↓ —
- kaltstart-triageKlotzkette/claude-fuer-deutsches-rechtFür Apothekenrecht — Allgemein: routet Rolle, Frist, Unterlagen und Fachschritt; Ergebnis: Prüfprodukt mit Risiko und nächstem Schritt.OtherNo warnings★ 1.8K↓ —
- canteraK-Dense-AI/scientific-agent-skillsRuns Cantera homogeneous chemical reactors and evaluates ignition delay with mechanism provenance, conservation checks, and numerical refinement. Use for combustion kinetics, closed adiabatic ideal-gas constant-volume or constant-pressure ignition, temperature histories, or mechanism-specific ignition-delay comparisons.ScienceNo warnings★ 55.5K↓ —Also in 1 other repo
- manage-skills-hubqufei1993/skills-hubUse this skill whenever an Agent needs to query, find, install, deploy, update, tag, adopt, diagnose, or safely remove Skills Hub content, including natural-language requests to manage Skills for Codex, Claude Code, Cursor, or another Agent. Always use the Skills Hub CLI workflow instead of editing Skill directories or the database.DevOpsNo warnings★ 1.8K↓ —
- kaltstart-triageKlotzkette/claude-fuer-deutsches-rechtFür Kaltstart Triage: routet Rolle, Frist, Unterlagen und Fachschritt; Ergebnis: Prüfprodukt mit Risiko und nächstem Schritt. Fachgebiet: BGB AT Prüfer.OtherNo warnings★ 1.8K↓ —
- note-takinginkeep/open-knowledgeHow to work in a Plain Notes project (the `plain-notes` starter pack): a flat notes/ folder plus a daily/ journal. The 'I just want to write' layout. Read when the project has these folders, OR when asked to jot a note, capture a quick thought, or write today's journal entry. Carries the linking habit and daily-entry behavior so templates and folder descriptions stay minimal. Complements the platform `open-knowledge` skill; does not replace it.ProductivityNo warnings★ 4.7K↓ —
- histolabK-Dense-AI/scientific-agent-skillsExtracts and preprocesses whole-slide histology image tiles with Histolab. Use for WSI inspection, tissue masks, random/grid/score-based tile extraction, H&E stain normalization, and tile dataset preparation. For multiplexed imaging or deep learning inference pipelines, use pathml.DocumentsNo warnings★ 55.5K↓ —Also in 1 other repo
- aktenfuehrungKlotzkette/claude-fuer-deutsches-rechtFür Aktenführung: ordnet Akte, Belege und Lücken; Ergebnis: Prüfprodukt mit Risiko und nächstem Schritt. Fachgebiet: Berufsrecht Notare.OtherNo warnings★ 1.8K↓ —
- blog-repurposeAgriciDaniel/claude-blogTurn an existing blog post into draft text for other channels: X threads, LinkedIn posts, Threads/Bluesky, short-video scripts, YouTube scripts, Reddit posts, newsletter excerpts, podcast scripts. Saves drafts to files; it never posts anywhere. Never invents personal stories or results: first-hand framing appears only when the user supplies it. Use when the user says "repurpose", "turn this post into a thread", "linkedin post from blog", "youtube script from post". Not for writing the blog post itself (blog-write) or scheduling.WritingNo warnings★ 2.6K↓ —
- data-protection-and-encryptioncbrock84/headcountProtects data itself rather than the systems around it — classifying what you hold, encrypting in transit and at rest and understanding what each actually defends against, managing keys and their rotation, handling secrets in applications and pipelines, minimizing and de-identifying, and deleting on purpose. Use this to design data protection for a system, assess an encryption claim, set up key or secret management, or work out what a stolen backup would actually expose.DesignNo warnings★ 2.5K↓ —
- kontenklaerung-drvKlotzkette/claude-fuer-deutsches-rechtFür kontenklärung-DRV: ordnet Norm, Beweislast und Gegenargument; Ergebnis: Prüfprodukt mit Risiko und nächstem Schritt.OtherNo warnings★ 1.8K↓ —
- arcgis-to-portaljsdatopian/portaljsMigrate a whole ArcGIS Hub site into a PortalJS Arc portal end-to-end. Harvests the Hub /data.json (DCAT-US) inventory, exports every FeatureService layer through the ArcGIS REST query API with resultOffset paging, converts each to the serverless dual tier (PMTiles render + GeoParquet query) with tabular items to Parquet, pushes everything to Cloudflare R2 via Git LFS, appends dual-tier datasets.json entries, and writes a source-vs-derived parity report. Use to move a City or sector ArcGIS Hub open-data portal onto PortalJS with no server-side compute.DevOpsNo warnings★ 2.4K↓ —
- portaljs-add-dcatdatopian/portaljsMake a PortalJS portal harvestable by national/EU/US open-data portals — emit standards-compliant DCAT catalog feeds (DCAT 2/3, DCAT-AP, DCAT-US, national profiles) in JSON-LD, Turtle, and RDF/XML at build, with autodiscovery and per-profile conformance checking. Use when a portal needs to be harvested by data.europa.eu, data.gov, or a national open-data catalog.LegalNo warnings★ 2.4K↓ —
- output-waehlenKlotzkette/claude-fuer-deutsches-rechtFür Output wählen: ordnet Norm, Beweislast und Gegenargument; Ergebnis: Prüfprodukt mit Risiko und nächstem Schritt. Fachgebiet: Technik-Governance.OtherNo warnings★ 1.8K↓ —
- codebase-wikiinkeep/open-knowledgeHow to work in a Codebase Wiki project (the `codebase-wiki` starter pack): an agent-authored, source-grounded wiki of the surrounding codebase. Read when the project has a `wiki/` knowledge base with `architecture/`, `modules/`, `flows/`, `concepts/`, and `guides/` sections plus `wiki/OVERVIEW.md`, or when asked to generate or refresh a wiki of this codebase. Carries the per-folder rules and freshness + log discipline, summarizes the audience/depth knobs and source-reference convention, and bundles the full generate/refresh procedure in `references/`. Complements the platform `open-knowledge` skill; does not replace it.PlanningNo warnings★ 4.7K↓ —
- blog-taxonomyAgriciDaniel/claude-blogSuggest tags and categories for a blog post from its content, audit a site's tag and category health, and, only after the user approves a shown plan, sync tags and categories to WordPress, Shopify, Ghost, Strapi, or Sanity. suggest and audit are read-only; sync is dry-run by default and never deletes, merges, or edits post content. Use when the user says "tag suggestions", "taxonomy audit", "sync tags", "WordPress tags", "Shopify tags". Not for keyword research (blog-brief) or schema markup (blog-schema).WritingNo warnings★ 2.6K↓ —
- nmrglueK-Dense-AI/scientific-agent-skillsProcesses calibrated one-dimensional complex NMR free-induction decays with nmrglue into phased spectra, peak candidates, and signed integration regions. Use for raw 1D NMR processing, ppm-axis verification, apodization, Fourier transformation, manual phasing, baseline correction, or reproducible spectral integration.PlanningNo warnings★ 55.5K↓ —Also in 1 other repo
ontology-term-resolution
K-Dense-AI/scientific-agent-skills
ScienceUpdated 6 days ago
From the author
Resolves free-text scientific labels to ontology term IDs and validates existing CURIEs against the EBI Ontology Lookup Service (OLS4). Also looks up prefixes in Bioregistry, resolves compact identifiers via Identifiers.org, maps lab shorthand with ZOOMA, and builds Ontobee term pages. Use whenever an ontology identifier must be produced or checked - annotating tissue, cell type, disease, phenotype, assay, chemical, organism, sex, or developmental stage fields; preparing metadata for GEO, ENA, BioSamples, CELLxGENE, HCA, or ISA-Tab submission; auditing a metadata table of term IDs; checking whether a term is obsolete and what replaced it; or deciding HPO vs HP. Triggers include "ontology term", "ontology ID", "CURIE", "controlled vocabulary", "UBERON", "CL:", "MONDO", "HPO", "EFO", "ChEBI", "NCBITaxon", "GO term", "PATO", "Zooma", "Bioregistry", "Identifiers.org", "Ontobee", "annotate this tissue/cell type/disease", and any request to emit or verify an identifier shaped like PREFIX:0001234.
Install
npx skills add K-Dense-AI/scientific-agent-skills --skill ontology-term-resolution -a claude-code
Installs to .claude/skills/ontology-term-resolution/ · Each command fetches the skill straight from GitHub with the open skills CLI.
Download .zip
Byte-identical to the scanned commit, with the repository’s licence and a SOURCE.txt.
What it can touch
Runs bundled scriptsNo network use seenLicence: MIT
Safety checks on SKILL.md
- Ships scripts we have not reviewedLow
Why 89
Security85
Provenance95
Maintenance100
Licence100
Adoption73
Files (12)
- SKILL.md
- references/companion-apis.md
- references/curation-rules.md
- references/ols4-api.md
- references/ontology-registry.md
- scripts/id_client.py
- scripts/lookup_prefix.py
- scripts/map_terms.py
- scripts/ols_client.py
- scripts/resolve_terms.py
- scripts/validate_terms.py
- scripts/zooma_client.py