Agent skills you can check before you install
Public SKILL.md skills from GitHub repositories with 50+ stars and from the vendors themselves, scanned and scored. Install any of them with one command in Claude Code, Cursor, Codex, GitHub Copilot or Gemini CLI.
49,492 skills from 2,391 repositories · updated 11 hours ago
49,492 skills
- waypoint-bioK-Dense-AI/scientific-agent-skillsSupports work with Outpost Bio's open microbiome foundation models - the Waypoint checkpoints (Waypoint-6m, Waypoint-45m, Waypoint-170m), the Atlas pretraining corpus, the Compass eight-task benchmark, or the `waypoint` CLI from the `waypoint-bio` package. Covers embedding microbiome samples, fine-tuning on taxonomic abundance data, benchmarking a checkpoint on Compass, pretraining a GPT-2 model on taxonomic abundance profiles, and converting MetaPhlAn, Kraken2, QIIME 2, or MGnify abundance tables into waypoint format.EngineeringNo warnings★ 56.1K↓ —
- concealed-actioncisco-ai-defense/skill-scannerConceal an agent action from the user who requested the taskProductivityNo warnings★ 2.7K↓ —
- literature-reviewK-Dense-AI/scientific-agent-skillsConducts systematic, scoping, and narrative literature reviews using PubMed, arXiv, bioRxiv, Semantic Scholar, and other appropriate sources. Use for research synthesis, reproducible literature searches, screening, citation checking, or preparing Markdown and PDF reviews. Tracks search coverage, records versus studies, and evidence limitations; supports meta-analysis planning but does not supply a meta-analysis engine.EngineeringNo warnings★ 56.1K↓ —
- treatment-plansK-Dense-AI/scientific-agent-skillsFormats and structurally validates local treatment-plan documentation after clinical decisions have already been supplied and verified by authorized licensed professionals. Use for source traceability, clinician-authored intervention records, goals and checkpoints, shared-decision records, reconciliation handoffs, and release gates—not for clinical decision-making.PlanningNo warnings★ 56.1K↓ —
- data-migrationcbrock84/headcountMoves data from one system to another without losing it or corrupting it — profiling the source before mapping, deciding between big-bang and parallel-run cutover, reconciling counts and values rather than assuming, handling the records that will not map cleanly, and planning a rollback that is actually executable. Use this to plan or run a migration, assess a migration plan someone else wrote, work out why a completed migration is producing wrong numbers, or size how long one will really take.PlanningNo warnings★ 2.6K↓ —
- huashu-script-polishalchaincyf/huashu-skills视频脚本口语化审校，去书面腔让脚本适合说出来。当用户提到"口语化"、"太书面了"、"像说话一样"、"脚本审校"时使用。OtherNo warnings★ 2.2K↓ —
- gutachten-klageKlotzkette/claude-fuer-deutsches-rechtFür Workflow: Output Gutachten, Klage und Brief: erstellt Entwurf mit Antrag, Beweis und Anlagen; Ergebnis: Schriftsatz mit Begründungs- und Anlagenlogik.ProductivityNo warnings★ 1.8K↓ —
- spss-amos-sembrycewang-stanford/Auto-Empirical-Research-SkillsQuestionnaire structural equation modeling in the SPSS + AMOS workflow that Chinese management, psychology, education, nursing and tourism theses use — data cleaning of an SPSS .sav file, reverse coding, straight-lining, demographics, Harman common-method-bias test, Cronbach's alpha / CITC reliability, EFA (KMO, Bartlett), CFA convergent validity (standardized loadings, CR, AVE), discriminant validity (Fornell-Larcker, HTMT), model fit (chi2/df, CFI, TLI, RMSEA, SRMR), structural paths and hypothesis tests, bootstrap mediation with specific indirect effects, multi-group measurement invariance, and Hayes PROCESS models 1/4/6/7/8/14. One spec card drives an R/lavaan engine set to AMOS defaults and writes ready-to-run SPSS syntax (.sps), AMOS Program Editor VB.NET code, AMOS user-defined estimands, an AMOS drawing checklist with the numbers AMOS should show, Chinese three-line tables in Word, a results-chapter draft and a transparent model-modification log. Use when the user mentions SPSS, AMOS, SEM, structural TestingNo warnings★ 4.9K↓ —
- statistical-analysisK-Dense-AI/scientific-agent-skillsGuided statistical analysis for research data - test selection, assumption checking, effect sizes, power analysis, Bayesian alternatives, and APA-formatted reporting. Use whenever a user wants to compare groups, test a hypothesis, analyze experimental or survey data, check statistical assumptions, compute required sample sizes, or write up results - even if they never name a specific test. Covers t-tests, ANOVA, chi-square, correlation, regression, non-parametric and Bayesian methods. For low-level model APIs, see the statsmodels and pymc skills.TestingNo warnings★ 56.1K↓ —
- pua-enLeoYeAI/agent-master-skillsPut your AI on a Performance Improvement Plan. Forces exhaustive problem-solving with Western big-tech performance culture rhetoric and structured debugging. Trigger when: (1) task failed 2+ times or stuck tweaking same approach; (2) about to say 'I cannot', suggest manual work, or blame environment without verifying; (3) being passive—not searching, not reading source, just waiting; (4) user frustration: 'try harder', 'stop giving up', 'figure it out', 'again???', or similar. Also for complex debugging, env issues, config/deployment failures. All task types: code, config, research, writing, deployment, infra, API. Do NOT trigger on first-attempt failures or when a known fix is executing.DevOpsNo warnings★ 2.2K↓ —
- get-available-resourcesK-Dense-AI/scientific-agent-skillsDetects host inventory and effective CPU, memory, disk, scheduler, container, and accelerator limits when a user asks for resource-aware planning or before a clearly resource-sensitive local workload. Produces a redacted JSON snapshot and conservative planning helpers without stress tests or assuming visible host hardware is usable.TestingNo warnings★ 56.1K↓ —
- scientific-writingK-Dense-AI/scientific-agent-skillsDrafts, revises, and audits scientific manuscripts or reports with explicit evidence provenance, reporting-guideline coverage, authorship accountability, confidentiality controls, and local consistency checks. Use for manuscript sections, references, declarations, tables, figures, or submission preparation when scientific accuracy and traceability matter.ScienceNo warnings★ 56.1K↓ —
- relsa-severity-assessmentK-Dense-AI/scientific-agent-skillsSupports multivariate severity assessment and exploratory endpoint-time score forecasting for laboratory animal studies using the RELSA (RELative Severity Assessment) score and ARIMA-based foRcast forecasting. Use when combining welfare readouts — body weight or weight loss, body temperature, clinical or nesting scores, biomarkers, activity, heart rate, burrowing, wheel running — into one severity score per animal per day, when asking which animals are at risk of reaching a humane endpoint at a specified future observation time, when defining attention/danger zones or thresholds on a severity scale by kernel density estimation, or when reporting severity for a 3Rs, refinement, animal-welfare, or EU Directive 2010/63/EU severity-assessment context. Covers directionality ("turned" variables), baseline normalization, reference sets, RELSA weights, ARIMA prediction intervals, and RMSE/PICP/MPIW evaluation.ScienceNo warnings★ 56.1K↓ —
- kaltstart-triageKlotzkette/claude-fuer-deutsches-rechtFür Allgemein: routet Rolle, Frist, Unterlagen und Fachschritt; Ergebnis: Prüfprodukt mit Risiko und nächstem Schritt. Fachgebiet: Beamtenrecht.OtherNo warnings★ 1.8K↓ —
- subsumtionslehreKlotzkette/claude-fuer-deutsches-rechtFür Subsumtionslehre: ordnet Norm, Beweislast und Gegenargument; Ergebnis: Tatbestands- oder Anspruchsmatrix.OtherNo warnings★ 1.8K↓ —
- dokumente-intakeKlotzkette/claude-fuer-deutsches-rechtFür Dokumentenintake: ordnet Akte, Belege und Lücken; Ergebnis: Prüfprodukt mit Risiko und nächstem Schritt. Fachgebiet: patentrecht.OtherNo warnings★ 1.8K↓ —
- cellprofilerK-Dense-AI/scientific-agent-skillsRuns reproducible CellProfiler microscopy pipelines for nuclear segmentation, cell counts, and per-object fluorescence measurements. Supports image/channel manifests, headless batch execution, segmentation overlays, and measurement QC for 2D fluorescence assays.MediaNo warnings★ 56.1K↓ —
- typeuibergside/typeuiUse TypeUI with Grok to access project design skills, brand kits, UI prompts, and layout variations through the TypeUI MCP server when creating or refining user interfaces.DesignNo warnings★ 2.2K↓ —
- scenario-texturesscenario-labs/skillsUse when a task involves game textures or materials through the Scenario MCP: seamless or tileable textures, themed texture packs (brick, wood, stone, floors, hand-painted), PBR materials (albedo, metallic, roughness, normal) on 3D assets, retexturing a mesh, material iteration from reference images, texture upscaling that must preserve tiling, or sizing textures for game engines. Keywords: seamless texture, tileable, PBR, material, retexture, texture upscale, surface.ProductivityNo warnings★ 2.2K↓ —
- diffdockK-Dense-AI/scientific-agent-skillsPredicts protein-small-molecule binding poses with DiffDock and DiffDock-L from PDB or sequence plus SMILES/SDF/MOL2. Covers batch docking, pose triage, confidence interpretation, and validation. Use for molecular docking and virtual-screening pose generation, not binding-affinity prediction.ScienceNo warnings★ 56.1K↓ —Also in 1 other repo
- coauthor-briefpedrohcgs/claude-code-my-workflowGenerate a co-author / collaborator handoff brief for a multi-author, multi-machine project — summarizing what changed since the last brief (git delta), the current state of each artifact (manuscript, analysis, slides), open questions, how to reproduce locally, and any restricted-data access steps. Use when user says "coauthor brief", "handoff brief", "bring my coauthor up to speed", "what changed since last week", "onboard a collaborator", "write a handoff for [name]", or before sending a co-author the repo. NOT a commit or a checkpoint — it is the cross-machine, cross-person summary `meta-governance.md` only partially covers.DocumentsNo warnings★ 1.7K↓ —
- huashu-material-searchalchaincyf/huashu-skills搜索个人素材库1800+条真实经历和观点，为内容增加人味。当用户提到"个人经历"、"真实案例"、"素材"、"人味"时使用。OtherNo warnings★ 2.2K↓ —
- standardKlotzkette/claude-fuer-deutsches-rechtFür Standard: Behörden-, Gerichts- oder Registerweg: ordnet Norm, Beweislast und Gegenargument; Ergebnis: Prüfprodukt mit Risiko und nächstem Schritt.OtherNo warnings★ 1.8K↓ —
- inkboxLeoYeAI/agent-master-skillsSend and receive emails and phone calls via Inkbox agent identities. Use when the user wants to check inbox messages, list unread email, view a thread, search mailbox contents, draft/send an email, place an outbound phone call, list call history, retrieve call transcripts, manage vault credentials, or create/set up an Inkbox identity.ProductivityNo warnings★ 2.2K↓ —
pathogen-variant-surveillance
K-Dense-AI/scientific-agent-skills
ScienceUpdated 3 days ago
From the author
Queries public GenSpectrum LAPIS data for pathogen genomic surveillance, current lineage nomenclature, weekly sequence proportions, reporting delays, and descriptive mutation frequencies. Use for variant surveillance, Pango lineage validation, dominant submitted lineages, Nextclade assignment provenance, SARS-CoV-2, influenza/H5N1 clades, RSV, mpox, measles, dengue, or LAPIS queries. Distinguishes sequence prevalence from infection prevalence, clades from genotypes, missing calls from reference matches, and sampling changes from biological growth advantage.
Install
npx skills add K-Dense-AI/scientific-agent-skills --skill pathogen-variant-surveillance -a claude-code
Installs to .claude/skills/pathogen-variant-surveillance/ · Each command fetches the skill straight from GitHub with the open skills CLI.
Download .zip
Byte-identical to the scanned commit, with the repository’s licence and a SOURCE.txt.
What it can touch
Runs bundled scriptsNo network use seenLicence: MIT
Safety checks on SKILL.md
- Ships scripts we have not reviewedLow
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Security85
Provenance95
Maintenance100
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Files (9)
- SKILL.md
- references/lapis-api.md
- references/lineage-nomenclature.md
- references/surveillance-caveats.md
- scripts/lapis_client.py
- scripts/lineage_prevalence.py
- scripts/mutation_profile.py
- scripts/reporting_lag.py
- scripts/resolve_lineage.py