Agent skills you can check before you install
Public SKILL.md skills from GitHub repositories with 50+ stars and from the vendors themselves, scanned and scored. Install any of them with one command in Claude Code, Cursor, Codex, GitHub Copilot or Gemini CLI.
49,501 skills from 2,391 repositories · updated 6 minutes ago
49,499 skills
- portaljs-connect-ckandatopian/portaljsWire a scaffolded PortalJS portal to a CKAN backend over its API. Generates a tiny server-side fetch client (no runtime dependency) and feeds the /search catalog and /@namespace/slug showcases from CKAN instead of datasets.json. Use when connecting an existing portal to a live CKAN instance instead of a static manifest.EngineeringNo warnings★ 2.4K↓ —
- statistical-powerK-Dense-AI/scientific-agent-skillsCalculates sample sizes and statistical power for study planning. Applies when someone asks "how many subjects/samples/replicates do I need", wants an a priori power analysis, a minimum detectable effect (MDE), a power curve, or needs to justify a sample size for a grant, IRB protocol, or pre-registration. Covers closed-form power for t-tests, ANOVA, proportions, correlations, chi-square, and regression, plus simulation-based (Monte Carlo) power for complex designs — logistic/Poisson regression, mixed models, cluster-randomized trials, survival, and interactions. Also handles requests that only mention an effect size, alpha, or "80% power" without saying "power analysis" explicitly. For laying out the study (randomization, blocking, factorial/DOE, crossover, sequential designs) use experimental-design; for analyzing data already collected and reporting it use statistical-analysis.TestingNo warnings★ 56.1K↓ —
- google-cloud-filestore-log-troubleshootinggoogle/skillsDiagnoses and resolves Filestore client mount failures on Google Cloud, permission errors (EACCES), and network timeouts (ETIMEDOUT). Use when an NFS mount hangs or fails from a Compute Engine VM, GKE pod, Cloud Run service, or Vertex AI workload, when `mount.nfs` reports "Connection timed out" or "access denied by server", when checking whether VPC ingress firewall rules or `nfsExportOptions` allow a client IP, or when a previously working Filestore share suddenly stops mounting after an administrative change. Don't use for Cloud Storage (GCS) buckets, Persistent Disk, or Cloud NetApp Volumes, and don't use for Filestore capacity scaling or backup and export-policy auditing.OfficialOtherNo warnings★ 21.9K↓ —
- user-behavior-analyzerLeoYeAI/agent-master-skills为AIME（AI交易助手）生成综合用户行为分析报告。当用户要求分析用户行为、生成用户报告、分析交互模式、调查用户流失、了解用户参与度或从用户ID或日志数据创建分析文档时，使用此技能。OtherNo warnings★ 2.2K↓ —
- scanpyK-Dense-AI/scientific-agent-skillsPerforms Scanpy single-cell RNA-seq QC, normalization, HVG selection, PCA/UMAP/t-SNE, clustering, exploratory marker ranking, pseudobulk preparation, visualization, and Seurat or SingleCellExperiment RDS conversion to h5ad. Applies to established exploratory scRNA-seq workflows with explicit count and expression provenance; complementary skills cover scvi-tools models and AnnData format details.MarketingNo warnings★ 56.1K↓ —Also in 2 other repos
- portaljs-new-portaldatopian/portaljsScaffold a new PortalJS data portal from a brief. Copies the canonical template from examples/portaljs-catalog and substitutes project tokens. Use when starting a brand-new data portal project from scratch.OtherNo warnings★ 2.4K↓ —
- alphagenomeK-Dense-AI/scientific-agent-skillsLooks up precomputed AlphaGenome Atlas effects for any GRCh38 single-nucleotide variant (AVI score with Phred and 18 SHAP feature attributions, plus raw and quantile scores for RNA-seq, DNase, ATAC, ChIP-TF, ChIP-histone, CAGE, PRO-cap, splicing, polyadenylation and contact-map tracks), scores variants or scans windows on demand with the AlphaGenome model for human and mouse (variant scoring, in silico mutagenesis, REF-versus-ALT track prediction), and builds Atlas website deep links. Use when the user mentions AlphaGenome, AlphaGenome Atlas, AVI or AlphaGenome Variant Impact, DeepMind variant effect prediction, or wants to prioritise or mechanistically interpret non-coding, regulatory, splicing, enhancer, promoter, or chromatin-accessibility effects of SNVs from a VCF, credible set, or region. Research use only; not a clinical tool.ScienceNo warnings★ 56.1K↓ —
- file-path-traversalzebbern/claude-code-guideThis skill should be used when the user asks to "test for directory traversal", "exploit path traversal vulnerabilities", "read arbitrary files through web applications", "find LFI vulnerabilities", or "access files outside web root". It provides comprehensive file path traversal attack and testing methodologies.SecurityNo warnings★ 4.7K↓ —
- fable-domainSahir619/fable-methodDiscuss a domain with the user, research it from real sources, then generate a trusted skill bundle for it - a step-by-step workflow with a flowchart, a domain adapter, a trap fixture, and a smoke eval. Use when the user says "/fable-domain SECTOR", "make a skill for DOMAIN", "add a domain to the fable method", or "give a lesser model Fable's workflow for DOMAIN". The bundle is the deliverable; a workflow without its flowchart, sources, and trap is not done.ScienceNo warnings★ 2.3K↓ —
- unioneLeoYeAI/agent-master-skillsSend transactional and marketing emails via UniOne Email API. Manage email templates, validate email addresses, check delivery statistics, manage suppression lists, configure webhooks, and handle domain settings. UniOne delivers billions of emails annually with 99.88% deliverability.MarketingNo warnings★ 2.2K↓ —
- cirqsickn33/agentic-awesome-skillsCirq is Google Quantum AI's open-source framework for designing, simulating, and running quantum circuits on quantum computers and simulators.OtherNo warnings★ 49.1K↓ —
- loresickn33/agentic-awesome-skillsMarkdown project memory for AI agents. Use for decisions, architecture, conventions, monorepo scopes, `.lore/`, or `lore` commands; not native `/init`/`/compact` or generic init/compress/audit/query.PlanningNo warnings★ 49.1K↓ —
- compile-latexpedrohcgs/claude-code-my-workflowCompile a Beamer LaTeX slide deck with XeLaTeX (3 passes + bibtex). Use when user says "compile", "build the slides", "rebuild the PDF", "run latex", "render the tex", or asks why a `.tex` file isn't producing a PDF. Operates on `Slides/*.tex`.DocumentsNo warnings★ 1.7K↓ —
- zeitnarrativeKlotzkette/claude-fuer-deutsches-rechtFür Zeitnarrative und Timesheet: ordnet Norm, Beweislast und Gegenargument; Ergebnis: Prüfprodukt mit Risiko und nächstem Schritt.OtherNo warnings★ 1.8K↓ —
- dokumente-intakeKlotzkette/claude-fuer-deutsches-rechtFür Dokumentenintake: ordnet Akte, Belege und Lücken; Ergebnis: Prüfprodukt mit Risiko und nächstem Schritt. Fachgebiet: Produkthaftung und Produktrecht.OtherNo warnings★ 1.8K↓ —
- scvi-toolsK-Dense-AI/scientific-agent-skillsFits probabilistic models for single-cell omics, including scVI batch integration, scANVI annotation, totalVI CITE-seq, MultiVI RNA/ATAC integration, and posterior differential expression. Use for generative modeling, reference mapping, multimodal analysis, or model-based uncertainty; use scanpy for standard preprocessing and exploratory analysis.OtherNo warnings★ 56.1K↓ —
- migrateNewLeoYeAI/agent-master-skillsUse when moving tests from Cypress or Selenium to Playwright ('migrate tests', 'convert tests', 'replace selenium').TestingNo warnings★ 2.2K↓ —
- scenario-mai-imagescenario-labs/skillsUse when generating or editing images with Microsoft MAI Image models on Scenario via MCP: photoreal or stylized text-to-image with legible in-image typography, posters, packaging, magazine covers, ads, key art, or instruction-based editing such as text swaps, recoloring, object removal or replacement, background swaps, lighting changes, and full restyles. Keywords: MAI Image 2.5, 2.5 Pro, 2.5 Edit, 2.5 Pro Edit, Microsoft, txt2img, img2img, typography, text rendering, image edit.MediaNo warnings★ 2.2K↓ —
- dev-simplifycodeaholicguy/ai-devkitAI DevKit · Analyze and simplify existing implementations to reduce complexity, improve maintainability, and enhance scalability. Use when users ask to simplify code, reduce complexity, refactor for readability, clean up implementations, improve maintainability, reduce technical debt, or make code easier to understand.EngineeringNo warnings★ 1.7K↓ —
- xproofLeoYeAI/agent-master-skillsProof and accountability layer for AI agents. Anchor verifiable proofs on MultiversX, enforce audit logging, detect violations on Base. REST API, MCP, x402. No proof = no action.EngineeringNo warnings★ 2.2K↓ —
- hivemind-graphactiveloopai/hivemindQuery the local AST-derived code graph (functions, classes, calls, imports) for structural codebase questions — what calls X, what does Y import, where is Z defined, blast radius of a change. The graph rebuilds automatically after each agent turn; use hivemind_graph_search and hivemind_graph_neighborhood tools (no manual build step).EngineeringNo warnings★ 1.6K↓ —
- gtarsK-Dense-AI/scientific-agent-skillsSupports Gtars for local genomic interval models and set algebra, overlaps and counts, consensus and coverage, tokenization, fragment processing, and refget/BEDbase planning across Python, Rust, and the CLI.ScienceNo warnings★ 56.1K↓ —Also in 2 other repos
- gogLeoYeAI/agent-master-skillsGoogle Workspace CLI for Gmail, Calendar, Drive, Contacts, Sheets, and Docs.EngineeringNo warnings★ 2.2K↓ —
- vague-utilitycisco-ai-defense/skill-scannerUtilityOtherNo warnings★ 2.7K↓ —
pathway-enrichment
K-Dense-AI/scientific-agent-skills
TestingUpdated 2 days ago
From the author
Performs pathway and gene-set enrichment analysis on gene lists or ranked gene data and interprets the results. Used when the user has a set of genes (differentially expressed genes from PyDESeq2/Scanpy, CRISPR-screen hits, cluster marker genes, proteomics hits) and wants to know which biological pathways, GO terms, or gene sets are over-represented or enriched. Covers over-representation analysis (ORA / Enrichr / Fisher / hypergeometric), ranked Gene Set Enrichment Analysis (GSEA / preranked), single-sample scoring (ssGSEA/GSVA), and functional profiling via gseapy, g:Profiler, Enrichr libraries, MSigDB, GO, KEGG, Reactome, and WikiPathways — plus gene-ID mapping, choosing the right background universe, multiple-testing correction, redundancy reduction, dotplots/enrichment maps, and publication-ready tables. Use this for "pathway analysis", "enrichment analysis", "GO enrichment", "KEGG/Reactome pathways", "GSEA", "over-representation", "functional annotation", or "what pathways are my genes in".
Install
npx skills add K-Dense-AI/scientific-agent-skills --skill pathway-enrichment -a claude-code
Installs to .claude/skills/pathway-enrichment/ · Each command fetches the skill straight from GitHub with the open skills CLI.
Download .zip
Byte-identical to the scanned commit, with the repository’s licence and a SOURCE.txt.
What it can touch
Runs bundled scriptsUses the networkLicence: MIT
Safety checks on SKILL.md
- Ships scripts we have not reviewedLow
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Provenance95
Maintenance100
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Files (6)
- SKILL.md
- references/databases-and-gene-sets.md
- references/gseapy.md
- references/interpretation.md
- references/verified-api.md
- scripts/run_enrichment.py