Agent skills you can check before you install
Public SKILL.md skills from GitHub repositories with 50+ stars and from the vendors themselves, scanned and scored. Install any of them with one command in Claude Code, Cursor, Codex, GitHub Copilot or Gemini CLI.
49,492 skills from 2,391 repositories · updated 9 hours ago
49,492 skills
- diffdockK-Dense-AI/scientific-agent-skillsPredicts protein-small-molecule binding poses with DiffDock and DiffDock-L from PDB or sequence plus SMILES/SDF/MOL2. Covers batch docking, pose triage, confidence interpretation, and validation. Use for molecular docking and virtual-screening pose generation, not binding-affinity prediction.ScienceNo warnings★ 56.1K↓ —Also in 1 other repo
- pyhealthK-Dense-AI/scientific-agent-skillsBuilds and validates PyHealth clinical machine-learning pipelines for EHR, signals, imaging, and medical codes. Use for PyHealth dataset loading, MIMIC-III/IV, eICU or OMOP prediction tasks, patient-level evaluation, mortality/readmission/length-of-stay modeling, medication recommendation, sleep staging, Trainer checkpoints, and ICD/ATC/NDC/RxNorm mapping.ScienceNo warnings★ 56.1K↓ —Also in 1 other repo
- webapp-testinggithub/awesome-copilotToolkit for interacting with and testing local web applications using Playwright. Supports verifying frontend functionality, debugging UI behavior, capturing browser screenshots, and viewing browser logs.TestingNo warnings★ 40.8K↓ —
- geomasterK-Dense-AI/scientific-agent-skillsSupports geospatial research workflows for remote sensing, vector and raster GIS, spatial statistics, terrain and network analysis, and machine learning for Earth observation. Use when processing satellite imagery, aligning coordinate systems and raster grids, accessing STAC catalogs, analyzing geospatial time series, or implementing scientific GIS workflows in Python, R, Julia, JavaScript, C++, Java, Go, or Rust.ScienceNo warnings★ 56.1K↓ —Also in 1 other repo
- gruen-fehlerkatalogKlotzkette/claude-fuer-deutsches-rechtFür Grün Fehlerkatalog: ordnet Norm, Beweislast und Gegenargument; Ergebnis: Prüfprodukt mit Risiko und nächstem Schritt.OtherNo warnings★ 1.8K↓ —
- liteparseK-Dense-AI/scientific-agent-skillsLocal document and PDF parsing that returns spatial text with bounding boxes. Use for extracting text from PDFs, DOCX, Office files, and images; running OCR on scans; producing layout-preserved JSON for RAG; batch-ingesting folders of papers; or rendering pages to PNG for multimodal agents. Distinguishing capabilities are spatial text boxes, Markdown, page raster output, and local parsing with optional custom HTTP OCR.DocumentsNo warnings★ 56.1K↓ —Also in 1 other repo
- eval-driven-devgithub/awesome-copilotImprove AI application with evaluation-driven development. Define eval criteria, instrument the application, build golden datasets, observe and evaluate application runs, analyze results, and produce a concrete action plan for improvements. ALWAYS USE THIS SKILL when the user asks to set up QA, add tests, add evals, evaluate, benchmark, fix wrong behaviors, improve quality, or do quality assurance for any Python project that calls an LLM model.TestingNo warnings★ 40.8K↓ —
- pacsomaticK-Dense-AI/scientific-agent-skillsPrepares and launches nf-core/pacsomatic matched tumor-normal PacBio HiFi genomics workflows from unaligned BAM inputs. Supports samplesheet generation, pinned Nextflow launch artifacts, local checks, LSF/Slurm/PBS Pro/SGE launcher submission, and startup troubleshooting. Use for pacsomatic run preparation and execution, not general short-read somatic analysis or medical imaging PACS.ScienceNo warnings★ 56.1K↓ —
- epo-quellenkarteKlotzkette/claude-fuer-deutsches-rechtFür Epo Quellenkarte: ordnet Norm, Beweislast und Gegenargument; Ergebnis: Prüfprodukt mit Risiko und nächstem Schritt.OtherNo warnings★ 1.8K↓ —
- kaltstartKlotzkette/claude-fuer-deutsches-rechtFür Kaltstart Corporate-Kanzlei: routet Rolle, Frist, Unterlagen und Fachschritt; Ergebnis: Prüfprodukt mit Risiko und nächstem Schritt.OtherNo warnings★ 1.8K↓ —
- kaltstart-interviewKlotzkette/claude-fuer-deutsches-rechtFür Kaltstart-Interview: routet Rolle, Frist, Unterlagen und Fachschritt; Ergebnis: Prüfprodukt mit Risiko und nächstem Schritt. Fachgebiet: Prozessrecht.PlanningNo warnings★ 1.8K↓ —
- scvi-toolsK-Dense-AI/scientific-agent-skillsFits probabilistic models for single-cell omics, including scVI batch integration, scANVI annotation, totalVI CITE-seq, MultiVI RNA/ATAC integration, and posterior differential expression. Use for generative modeling, reference mapping, multimodal analysis, or model-based uncertainty; use scanpy for standard preprocessing and exploratory analysis.OtherNo warnings★ 56.1K↓ —
- umap-learnK-Dense-AI/scientific-agent-skillsApplies UMAP-learn to nonlinear dimensionality reduction, 2D/3D embeddings, clustering preprocessing, supervised or semi-supervised UMAP, DensMAP, AlignedUMAP, and Parametric UMAP workflows.OtherNo warnings★ 56.1K↓ —
- alphagenomeK-Dense-AI/scientific-agent-skillsLooks up precomputed AlphaGenome Atlas effects for any GRCh38 single-nucleotide variant (AVI score with Phred and 18 SHAP feature attributions, plus raw and quantile scores for RNA-seq, DNase, ATAC, ChIP-TF, ChIP-histone, CAGE, PRO-cap, splicing, polyadenylation and contact-map tracks), scores variants or scans windows on demand with the AlphaGenome model for human and mouse (variant scoring, in silico mutagenesis, REF-versus-ALT track prediction), and builds Atlas website deep links. Use when the user mentions AlphaGenome, AlphaGenome Atlas, AVI or AlphaGenome Variant Impact, DeepMind variant effect prediction, or wants to prioritise or mechanistically interpret non-coding, regulatory, splicing, enhancer, promoter, or chromatin-accessibility effects of SNVs from a VCF, credible set, or region. Research use only; not a clinical tool.ScienceNo warnings★ 56.1K↓ —
- hugging-scienceK-Dense-AI/scientific-agent-skillsDiscovers and evaluates scientific datasets, models, methodology posts, and Spaces through the Hugging Science catalog. Used when selecting scientific ML resources in biology, chemistry, genomics, materials, climate, physics, astronomy, medicine, mathematics, protein design, single-cell analysis, or PDE modeling, and when checking their actual datasets, Transformers, native-runtime, Inference Providers, or Gradio interfaces.ScienceNo warnings★ 56.1K↓ —
- scikit-survivalK-Dense-AI/scientific-agent-skillsBuilds, evaluates, and audits right-censored or competing-risk survival workflows with scikit-survival, including leakage-safe preprocessing, model selection, probability prediction, and censoring-aware metrics.OtherNo warnings★ 56.1K↓ —
- dnanexus-integrationK-Dense-AI/scientific-agent-skillsBuilds and operates reproducible genomics workloads on DNAnexus with the dx CLI, dxpy, apps/applets, native workflows, dxCompiler, and Nextflow. Supports DNAnexus data transfers, dxapp.json development, execution monitoring, workflow import, and project automation.ScienceNo warnings★ 56.1K↓ —
- neuropixels-analysisK-Dense-AI/scientific-agent-skillsAnalyzes Neuropixels extracellular recordings end-to-end with SpikeInterface. Covers loading SpikeGLX/Open Ephys/NWB data, preprocessing, drift/motion correction, Kilosort4 (and CPU) spike sorting, quality metrics, and unit curation (threshold-based, model-based UnitRefine, and AI-assisted visual review). Use when working with Neuropixels 1.0/2.0 recordings, spike sorting, or extracellular electrophysiology analysis.EngineeringNo warnings★ 56.1K↓ —
- hypothesis-generationK-Dense-AI/scientific-agent-skillsFormulates evidence-bounded scientific questions, candidate hypotheses, rival explanations, causal or associational claims, discriminating predictions, measurements, and preregistration-ready analysis plans. Used when turning observations or preliminary findings into transparent, testable research plans without treating hypotheses as facts.ScienceNo warnings★ 56.1K↓ —
- uncertainty-and-unitsK-Dense-AI/scientific-agent-skillsTracks physical units and propagates measurement uncertainty in scientific calculations using pint and uncertainties. Use for unit conversion and dimensional checking, GUM uncertainty budgets, Type A and Type B evaluation, coverage factors and expanded uncertainty, Monte Carlo propagation, significant-figure and plus-minus reporting, error propagation through curve fits, CODATA constants, auditing Python code for stripped units or broken uncertainty propagation, and order-of-magnitude plausibility checks using dimensionless groups (Reynolds, Peclet, Damkohler, Knudsen, Biot, Womersley), characteristic scales such as diffusion time or Debye length, and observed magnitude ranges. Trigger on "is this number physically reasonable", "sanity check these units", "what regime is this flow in", or a result that looks off by orders of magnitude.ScienceNo warnings★ 56.1K↓ —
- labarchive-integrationK-Dense-AI/scientific-agent-skillsIntegrates with the official LabArchives ELN REST-like API and Inventory API v1. Supports regional endpoint selection, signed-request construction, user authorization and UID flows, local LA container validation, and verified LabArchives integration workflows.EngineeringNo warnings★ 56.1K↓ —
- winmd-api-searchgithub/awesome-copilotFind and explore Windows desktop APIs. Use when building features that need platform capabilities — camera, file access, notifications, UI controls, AI/ML, sensors, networking, etc. Discovers the right API for a task and retrieves full type details (methods, properties, events, enumeration values).EngineeringNo warnings★ 40.8K↓ —
- huashu-speech-coachalchaincyf/huashu-skills演讲与分享教练。基于Patrick Winston（MIT AI教授）的How to Speak方法论，帮助准备线下培训、技术分享、B站教程视频等演讲场景。当用户提到"演讲"、"分享"、"培训"、"讲课"、"PPT演讲"、"开场"、"结尾"、"如何讲"、"演讲结构"时使用此技能。OtherNo warnings★ 2.2K↓ —
- huashu-script-polishalchaincyf/huashu-skills视频脚本口语化审校，去书面腔让脚本适合说出来。当用户提到"口语化"、"太书面了"、"像说话一样"、"脚本审校"时使用。OtherNo warnings★ 2.2K↓ —
auto-empirical-research-skills
brycewang-stanford/Auto-Empirical-Research-Skills
ScienceUpdated 3 days ago
From the author
Route empirical-research requests through the Auto-Empirical Research Skills catalog when this whole repository is installed as one skill in Codex, CodeBuddy, Claude Code, or another IDE. Use to choose and load the right vendored AERS skill for causal inference, econometrics, replication, data acquisition, manuscript writing, peer review and referee responses, citation checking, de-AIGC editing, or full empirical-paper workflows, or an end-to-end run from raw data all the way to a finished Word (.docx) manuscript, without reading the entire repository at once.
Install
npx skills add brycewang-stanford/Auto-Empirical-Research-Skills --skill auto-empirical-research-skills -a claude-code
Installs to .claude/skills/auto-empirical-research-skills/ · Each command fetches the skill straight from GitHub with the open skills CLI.
No download: this skill’s licence (CC-BY-SA-4.0) does not let us redistribute its files. The install commands fetch them from GitHub instead.
What it can touch
Instructions onlyNo network use seenLicence: CC-BY-SA-4.0
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Files (23)
- .gitignore
- .gitmodules
- .nojekyll
- .pre-commit-config.yaml
- CHANGELOG.md
- CITATION.cff
- CODE_OF_CONDUCT.md
- CONTRIBUTING.md
- INSTALL.md
- LICENSE
- Makefile
- README-en.md
- +11 more