Agent skills you can check before you install
Public SKILL.md skills from GitHub repositories with 50+ stars and from the vendors themselves, scanned and scored. Install any of them with one command in Claude Code, Cursor, Codex, GitHub Copilot or Gemini CLI.
49,492 skills from 2,391 repositories · updated 6 hours ago
49,492 skills
- sympyK-Dense-AI/scientific-agent-skillsPerforms exact symbolic mathematics with SymPy for algebra, calculus, equation solving, symbolic linear algebra, physics, and lambdify or LaTeX code generation. Use when a task needs symbolic results, explicit assumptions, or exact arithmetic; use NumPy or SciPy for purely numerical workloads.ScienceNo warnings★ 56.1K↓ —Also in 2 other repos
- deepchemK-Dense-AI/scientific-agent-skillsBuilds molecular property prediction and MoleculeNet workflows with DeepChem, including SMILES featurization, scaffold or grouped holdouts, masked labels, graph models and explicit pretrained encoder transfer. Used for ADMET, toxicity, solubility and chemistry ML when DeepChem data/model contracts and scientific validation are needed.ScienceNo warnings★ 56.1K↓ —Also in 1 other repo
- mitarbeiterKlotzkette/claude-fuer-deutsches-rechtFür Mitarbeiter: ordnet Norm, Beweislast und Gegenargument; Ergebnis: Prüfprodukt mit Risiko und nächstem Schritt. Fachgebiet: Berufsrecht Anwälte.OtherNo warnings★ 1.8K↓ —
- ink-app-builderandroid/skillsAdds inking and freehand drawing capabilities to an Android app using Jetpack Ink (androidx.ink) and Compose. Use this skill when implementing stylus or touch drawing surfaces, rendering wet and dry ink strokes, configuring stock brushes (pressure pen, marker, highlighter), implementing geometry-based erasing, linear undo and redo history, or stroke persistence with Room. Delivers working Compose and ViewModel implementations. Don't use for View-based (XML) inking or programmatic custom BrushFamily creation. For custom BrushFamily creation, custom tip shapes, or behavior node graphs, suggest the ink-custom-brush-builder skill.OfficialMediaNo warnings★ 10.3K↓ —
- neurokit2K-Dense-AI/scientific-agent-skillsBuilds and audits reproducible NeuroKit2 research workflows for physiological time-series preprocessing, event/interval analysis, multimodal alignment, variability, and complexity. Use when code imports neurokit2 or needs its current APIs, schemas, and method-aware validation—not for diagnosis or device validation.ScienceNo warnings★ 56.1K↓ —Also in 1 other repo
- liteparseK-Dense-AI/scientific-agent-skillsLocal document and PDF parsing that returns spatial text with bounding boxes. Use for extracting text from PDFs, DOCX, Office files, and images; running OCR on scans; producing layout-preserved JSON for RAG; batch-ingesting folders of papers; or rendering pages to PNG for multimodal agents. Distinguishing capabilities are spatial text boxes, Markdown, page raster output, and local parsing with optional custom HTTP OCR.DocumentsNo warnings★ 56.1K↓ —Also in 1 other repo
- pedagogy-reviewpedrohcgs/claude-code-my-workflowHolistic pedagogical review of a lecture deck (`.qmd` or `.tex`). Checks narrative arc, prerequisite assumptions, worked examples, notation clarity, and deck-level pacing. Use when user says "pedagogy review", "does this teach well?", "is the flow right?", "will students follow?", "review the narrative", or before teaching a deck for the first time. Read-only; produces a report.EngineeringNo warnings★ 1.7K↓ —
- pptx-postersK-Dense-AI/scientific-agent-skillsCreates and audits editable scientific posters in macro-free PowerPoint (.pptx) from author-approved local content and assets. Used when the requested deliverable is a PowerPoint research/conference poster and exact physical, printer, accessibility, provenance, and package-security checks are required.DocumentsNo warnings★ 56.1K↓ —
- lernplanKlotzkette/claude-fuer-deutsches-rechtFür Staatsexamen-Lernplan: ordnet Norm, Beweislast und Gegenargument; Ergebnis: Prüfprodukt mit Risiko und nächstem Schritt.OtherNo warnings★ 1.8K↓ —
- bgbKlotzkette/claude-fuer-deutsches-rechtFür BGB: Verhandlung, Vergleich und Eskalation: ordnet Norm, Beweislast und Gegenargument; Ergebnis: Prüfprodukt mit Risiko und nächstem Schritt. Fachgebiet: Betreuungsrecht. Route: bgb.OtherNo warnings★ 1.8K↓ —
- verfahrenKlotzkette/claude-fuer-deutsches-rechtFür Verfahren — Behörden und Gerichte: ordnet Norm, Beweislast und Gegenargument; Ergebnis: Prüfprodukt mit Risiko und nächstem Schritt.OtherNo warnings★ 1.8K↓ —
- verify-artifactpedrohcgs/claude-code-my-workflowProve that the file you are about to send, publish, or hand off IS the thing you mean — before it leaves your hands. Rebuild from source, check integrity, diff the derived artifact against its source, and require the recipient to echo what they received. Use before sending a paper/PDF for review, shipping a release or replication package, handing files to a coauthor or collaborator, uploading anything to an external reviewer or model, or publishing. Prevents an entire review/QA cycle from being spent on defects that exist only in the artifact, not in the work.TestingNo warnings★ 1.7K↓ —
- grant-proposalpedrohcgs/claude-code-my-workflowScaffold a research grant proposal (NSF, NIH, ERC, or foundation) by composing existing primitives — pulls identification strategy from an `/interview-me` spec, delegates the data-management plan to `/data-management-plan` and the facilities statement to `/capture-environment`, and emits a funder-requirements checklist. Use when user says "draft a grant", "write a proposal", "NSF proposal", "NIH aims", "ERC application", "foundation grant", "specific aims", or "scaffold a grant proposal". NOT a submission tool — produces a draft the user uploads to the sponsor's portal themselves.ScienceNo warnings★ 1.7K↓ —
- gtarsK-Dense-AI/scientific-agent-skillsSupports Gtars for local genomic interval models and set algebra, overlaps and counts, consensus and coverage, tokenization, fragment processing, and refget/BEDbase planning across Python, Rust, and the CLI.ScienceNo warnings★ 56.1K↓ —Also in 2 other repos
- unpinned-dependencycisco-ai-defense/skill-scannerDemonstrate a package dependency that is not locked to an exact versionOtherNo warnings★ 2.7K↓ —
- power-analysispedrohcgs/claude-code-my-workflowCompute statistical power, required sample size, and minimum detectable effect (MDE) for a study design, then write a registry-ready power section. Handles two-arm RCTs (with clustering / ICC and unequal allocation), multiple-arm corrections, and a simulation-based power option for non-standard designs (DiD/event-study, IV, panel). Use when user says "power analysis", "power calculation", "MDE", "minimum detectable effect", "how big a sample do I need", "is my study powered", "power for an RCT", or when /preregister needs a power section for an experiment. Produces a power/MDE table, power curves, and a methods paragraph to paste into a preregistration.DesignNo warnings★ 1.7K↓ —
- zeitnarrativeKlotzkette/claude-fuer-deutsches-rechtFür Zeitnarrative und Timesheet: ordnet Norm, Beweislast und Gegenargument; Ergebnis: Prüfprodukt mit Risiko und nächstem Schritt.OtherNo warnings★ 1.8K↓ —
- anschluss-routerKlotzkette/claude-fuer-deutsches-rechtFür Produktrecht — Allgemein: ordnet Norm, Beweislast und Gegenargument; Ergebnis: Prüfprodukt mit Risiko und nächstem Schritt.OtherNo warnings★ 1.8K↓ —
- mitarbeiterKlotzkette/claude-fuer-deutsches-rechtFür Mitarbeiter: ordnet Norm, Beweislast und Gegenargument; Ergebnis: Prüfprodukt mit Risiko und nächstem Schritt. Fachgebiet: Berufsrecht Notare.OtherNo warnings★ 1.8K↓ —
- bulk-rnaseqK-Dense-AI/scientific-agent-skillsPrepares bulk RNA-seq FASTQ, Salmon, STAR or featureCounts output for gene-level differential expression. Covers nf-core/rnaseq and standalone quantification, biological replication, strandedness, reference provenance, validated count assembly and a PyDESeq2 handoff. Use for FASTQ-to-counts analysis, nf-core/rnaseq configuration, STAR/Salmon quantification, or building a counts matrix for DESeq2. For single-cell data use scanpy; for statistical fitting alone use pydeseq2.ScienceNo warnings★ 56.1K↓ —
- preregisterpedrohcgs/claude-code-my-workflowDraft a structured preregistration document (OSF, AsPredicted, or AEA RCT Registry style) from a research spec or free-form study description. Output is a Markdown file with hypotheses, design, sampling plan, analysis plan, exclusions, and inference criteria — annotated with MUST / SHOULD / MAY clarity flags. Use when user says "preregister", "draft a preregistration", "OSF preregistration", "AsPredicted", "AEA RCT registry", "PAP", "preanalysis plan", or before launching an experiment / data collection / analysis on data the analyst has not yet seen. NOT a registry submission tool — produces a document the user uploads to OSF / AsPredicted / AEA themselves.DesignNo warnings★ 1.7K↓ —
- blog-clusterAgriciDaniel/claude-blogSemantic topic cluster planning and automated execution engine for claude-blog. Performs SERP-based keyword research, groups keywords by search intent and SERP overlap, builds a hub-and-spoke cluster architecture, generates an interactive SVG cluster map, and executes the full cluster by orchestrating blog-write calls with shared cluster context and automatic internal-link injection. Fills the strategy-to-execution gap: blog-strategy plans the blueprint, blog-cluster builds the house. Use when user says "blog cluster", "topic cluster", "content cluster", "cluster plan", "cluster execute", "cluster map".WritingNo warnings★ 2.6K↓ —
- lma-facilityKlotzkette/claude-fuer-deutsches-rechtFür Deal-Kommandocenter — Corporate/M&A: ordnet Norm, Beweislast und Gegenargument; Ergebnis: Prüfprodukt mit Risiko und nächstem Schritt. Fachgebiet: Corporate-Kanzlei. Route: lma-facility.OtherNo warnings★ 1.8K↓ —
- toobitLeoYeAI/agent-master-skillsTrade crypto on Toobit exchange via natural language. Spot & USDT-M futures trading, market data queries, wallet management. Use when user mentions Toobit, or wants to trade/query crypto on Toobit.FinanceNo warnings★ 2.2K↓ —
pathway-enrichment
K-Dense-AI/scientific-agent-skills
TestingUpdated 3 days ago
From the author
Performs pathway and gene-set enrichment analysis on gene lists or ranked gene data and interprets the results. Used when the user has a set of genes (differentially expressed genes from PyDESeq2/Scanpy, CRISPR-screen hits, cluster marker genes, proteomics hits) and wants to know which biological pathways, GO terms, or gene sets are over-represented or enriched. Covers over-representation analysis (ORA / Enrichr / Fisher / hypergeometric), ranked Gene Set Enrichment Analysis (GSEA / preranked), single-sample scoring (ssGSEA/GSVA), and functional profiling via gseapy, g:Profiler, Enrichr libraries, MSigDB, GO, KEGG, Reactome, and WikiPathways — plus gene-ID mapping, choosing the right background universe, multiple-testing correction, redundancy reduction, dotplots/enrichment maps, and publication-ready tables. Use this for "pathway analysis", "enrichment analysis", "GO enrichment", "KEGG/Reactome pathways", "GSEA", "over-representation", "functional annotation", or "what pathways are my genes in".
Install
npx skills add K-Dense-AI/scientific-agent-skills --skill pathway-enrichment -a claude-code
Installs to .claude/skills/pathway-enrichment/ · Each command fetches the skill straight from GitHub with the open skills CLI.
Download .zip
Byte-identical to the scanned commit, with the repository’s licence and a SOURCE.txt.
What it can touch
Runs bundled scriptsUses the networkLicence: MIT
Safety checks on SKILL.md
- Ships scripts we have not reviewedLow
Why 89
Security85
Provenance95
Maintenance100
Licence100
Adoption73
Files (6)
- SKILL.md
- references/databases-and-gene-sets.md
- references/gseapy.md
- references/interpretation.md
- references/verified-api.md
- scripts/run_enrichment.py