Agent skills you can check before you install
Public SKILL.md skills from GitHub repositories with 50+ stars and from the vendors themselves, scanned and scored. Install any of them with one command in Claude Code, Cursor, Codex, GitHub Copilot or Gemini CLI.
49,492 skills from 2,391 repositories · updated 6 hours ago
49,492 skills
- redteam-qualitygateKlotzkette/claude-fuer-deutsches-rechtFür Red-Team Qualitygate: prüft Ergebnis, Beweislast und Gegenposition; Ergebnis: Gegenprüfung mit Beweis- und Fristencheck. Fachgebiet: NDA-Abgleich. Route: redteam-qualitygate.LegalNo warnings★ 1.8K↓ —
- anndataK-Dense-AI/scientific-agent-skillsHandles annotated matrices in single-cell analysis, .h5ad and Zarr files, and integration with the scverse ecosystem. This is the data format skill—for analysis workflows use scanpy; for probabilistic models use scvi-tools; for population-scale queries use cellxgene-census.OtherNo warnings★ 56.1K↓ —Also in 2 other repos
- pysamK-Dense-AI/scientific-agent-skillsProvides Python/HTSlib workflows for genomic files. Used when reading, querying, filtering, or writing SAM/BAM/CRAM, VCF/BCF, FASTA/FASTQ, or tabix data with pysam, including pileup, coverage, indexing, and CRAM references.ScienceNo warnings★ 56.1K↓ —Also in 2 other repos
- opcodeLeoYeAI/agent-master-skillsZero-token execution layer for AI agents. Define workflows once, run them free forever — persistent, scheduled, deterministic. 6 MCP tools over SSE. Supports DAG-based execution, 6 step types (action, condition, loop, parallel, wait, reasoning), 26 built-in actions, ${{}} interpolation, reasoning nodes for human-in-the-loop decisions, and secret vault. Use when defining workflows, running templates, checking status, sending signals, querying workflow history, or visualizing DAGs.ProductivityNo warnings★ 2.2K↓ —
- oil-motionoil-oil/oil-motion把 AI 生成或已有的视频、序列帧变成随滚动、指针、拖动、触摸、设备方向、音频、数据或状态变化的网页动画：设计动作方向，生成关键帧与视频，整理成图集或视频，编译时间轴并接入运行时。用户需要角色转向、产品拆解、镜头穿越、一镜到底转场，或要清理、抠色、补帧、压缩绿幕视频与雪碧图时使用。不用于纯 CSS、JS、SVG、Lottie 或实时 3D 就能完成的界面过渡与微交互（交给普通前端实现），也不用于独立成片剪辑、单张配图或静态页面。DesignNo warnings★ 2.8K↓ —
- portaljs-new-portaldatopian/portaljsScaffold a new PortalJS data portal from a brief. Copies the canonical template from examples/portaljs-catalog and substitutes project tokens. Use when starting a brand-new data portal project from scratch.OtherNo warnings★ 2.4K↓ —
- flowkitK-Dense-AI/scientific-agent-skillsAnalyzes flow cytometry data with FlowKit, including spillover compensation, logicle and biexponential transforms, hierarchical gating, GatingML strategies, and supported FlowJo 10 workspaces. Use for reproducible gate counts, population percentages, gated fluorescence summaries, or reproducing a FlowJo analysis in Python. For FCS metadata inspection or file-format repair alone, use FlowIO.EngineeringNo warnings★ 56.1K↓ —Also in 2 other repos
- huashu-article-editalchaincyf/huashu-skills标准化文章编辑流程，确保修改范围明确、进度可追踪、变更有记录。当用户说"编辑文章"、"修改文章"、"调整内容"、"改一下这篇"时使用此技能。WritingNo warnings★ 2.2K↓ —
- deepspot-mK-Dense-AI/scientific-agent-skillsGenerates transcriptome-wide virtual spatial transcriptomics from H&E histology with DeepSpot-M. Used for predicted log1p-CPM expression from 224x224 tiles at about 20x, querying the released protein-coding gene panel by symbol, and whole-slide prediction after resolution-aware tiling with histolab.DocumentsNo warnings★ 56.1K↓ —
- data-governancecbrock84/headcountEstablishes ownership, definitions, quality, access, and lineage for the organization's data. Use this when metrics disagree between teams, when nobody knows which dataset is authoritative, when setting up data ownership or access policy, when data quality is unreliable, or before opening a dataset to a wider audience.OtherNo warnings★ 2.6K↓ —
- portaljs-connect-ckandatopian/portaljsWire a scaffolded PortalJS portal to a CKAN backend over its API. Generates a tiny server-side fetch client (no runtime dependency) and feeds the /search catalog and /@namespace/slug showcases from CKAN instead of datasets.json. Use when connecting an existing portal to a live CKAN instance instead of a static manifest.EngineeringNo warnings★ 2.4K↓ —
- extract-tikzpedrohcgs/claude-code-my-workflowExtract TikZ diagrams from Beamer `.tex` source, compile each to a standalone PDF, and convert to SVG with 0-based indexing. Use when user says "extract the tikz", "regenerate the diagrams", "rebuild the SVGs", "sync tikz to quarto", or after editing TikZ blocks in a Beamer deck that also has a Quarto mirror.DocumentsNo warnings★ 1.7K↓ —
- dokumente-intakeKlotzkette/claude-fuer-deutsches-rechtFür Dokumentenintake: ordnet Akte, Belege und Lücken; Ergebnis: Prüfprodukt mit Risiko und nächstem Schritt. Fachgebiet: patentrecherche.OtherNo warnings★ 1.8K↓ —
- portaljs-add-resourcedatopian/portaljsAdd another file (resource) to an EXISTING dataset in a PortalJS portal — a data dictionary, methodology, or an additional data file. Turns a single-file dataset into a multi-resource one; the showcase renders a section per resource. Use when a dataset needs a second file, such as a data dictionary, methodology doc, or an additional period's data.MediaNo warnings★ 2.4K↓ —
- labarchive-integrationK-Dense-AI/scientific-agent-skillsIntegrates with the official LabArchives ELN REST-like API and Inventory API v1. Supports regional endpoint selection, signed-request construction, user authorization and UID flows, local LA container validation, and verified LabArchives integration workflows.EngineeringNo warnings★ 56.1K↓ —
- what-if-oracleK-Dense-AI/scientific-agent-skillsSupports structured what-if scenario analysis for research planning, experimental contingencies, and scientific project decisions. Explores favorable, reference, adverse, wild-card, contrarian, and second-order scenarios with explicit assumptions, evidence, and decision triggers. Use to stress-test a research plan under uncertainty; scenario narratives do not estimate causal effects or calibrated forecast probabilities.TestingNo warnings★ 56.1K↓ —
- scenario-video-adsscenario-labs/skillsUse when producing a video ad with Scenario from a product shot or brand assets: a mobile 9:16 or landscape 16:9 commercial, a TikTok, Reels, Shorts, YouTube, or CTV spot, or campaign creative needing a creative brief, storyboard, cinematic camera work, brand-faithful product footage, music and voiceover, captions, ad variants, budget planning, or platform delivery specs. Keywords: video ad, commercial, product video, advert, hook, CTA, end card, campaign, ad creative.MediaNo warnings★ 2.2K↓ —
- agent-managementcodeaholicguy/ai-devkitAI DevKit · Manage running AI agents with ai-devkit agent commands. Use when an agent needs to identify itself, list agents, start workers, inspect agent detail, assign work, group agents, resume sessions, stop agents, or delegate work to other agents.OtherNo warnings★ 1.7K↓ —
- document-codecodeaholicguy/ai-devkitAI DevKit · Document a code entry point with structured analysis, dependency mapping, and saved knowledge docs. Use when users ask to document, understand, or map code for a module, file, folder, function, or API.EngineeringNo warnings★ 1.7K↓ —
- developer-device-platform-basicsgoogle/skillsProvides guidance and instructions on managing remote devices on Developer Device Platform (DDP). Use when reserving remote Android devices, establishing connection tunnels, checking session status, or extending/cancelling leases. Don't use for iOS or local device/hardware inquiries.OfficialOtherNo warnings★ 21.9K↓ —
- agents-best-practicesDenisSergeevitch/agents-best-practicesUse this skill when designing, generating an MVP blueprint for, auditing, troubleshooting, refactoring, or explaining an agentic harness for any domain. Covers provider-neutral agent architecture for OpenAI, Anthropic, and OpenAI-compatible APIs: agent loops, tool design, record provenance, interactive presentation, user-memory lifecycles, environment-adaptive tools, speculative tool execution, late-bound capabilities, permissions, system prompts, planning, goals, always-on agents and durable runtime, adaptive agent teams, context compaction, memory, skills, MCP/external connectors, public-board communications, realtime voice agents, hardware agents and board deployment, self-refining recursive harnesses, programmable context, continual refinement, observability, evals, prompt caching, agent-legible environments, feedback loops, and safety.DevOpsNo warnings★ 2.4K↓ —
- hypothesis-generationK-Dense-AI/scientific-agent-skillsFormulates evidence-bounded scientific questions, candidate hypotheses, rival explanations, causal or associational claims, discriminating predictions, measurements, and preregistration-ready analysis plans. Used when turning observations or preliminary findings into transparent, testable research plans without treating hypotheses as facts.ScienceNo warnings★ 56.1K↓ —
- ressort-bmlehKlotzkette/claude-fuer-deutsches-rechtFür Ressort-Heranführung BMLEH: ordnet Norm, Beweislast und Gegenargument; Ergebnis: Prüfprodukt mit Risiko und nächstem Schritt.OtherNo warnings★ 1.8K↓ —
- dev-refactorcodeaholicguy/ai-devkitAI DevKit · Systematic structural or multi-file refactors across any stack while preserving behavior and public contracts. Use for reorganizing modules, boundaries, naming, APIs/contracts, staged refactor plans, or refactor risk review.EngineeringNo warnings★ 1.7K↓ —
alphagenome
K-Dense-AI/scientific-agent-skills
ScienceUpdated 3 days ago
From the author
Looks up precomputed AlphaGenome Atlas effects for any GRCh38 single-nucleotide variant (AVI score with Phred and 18 SHAP feature attributions, plus raw and quantile scores for RNA-seq, DNase, ATAC, ChIP-TF, ChIP-histone, CAGE, PRO-cap, splicing, polyadenylation and contact-map tracks), scores variants or scans windows on demand with the AlphaGenome model for human and mouse (variant scoring, in silico mutagenesis, REF-versus-ALT track prediction), and builds Atlas website deep links. Use when the user mentions AlphaGenome, AlphaGenome Atlas, AVI or AlphaGenome Variant Impact, DeepMind variant effect prediction, or wants to prioritise or mechanistically interpret non-coding, regulatory, splicing, enhancer, promoter, or chromatin-accessibility effects of SNVs from a VCF, credible set, or region. Research use only; not a clinical tool.
Install
npx skills add K-Dense-AI/scientific-agent-skills --skill alphagenome -a claude-code
Installs to .claude/skills/alphagenome/ · Each command fetches the skill straight from GitHub with the open skills CLI.
Download .zip
Byte-identical to the scanned commit, with the repository’s licence and a SOURCE.txt.
What it can touch
Runs bundled scriptsUses the networkLicence: MIT
Safety checks on SKILL.md
- Ships scripts we have not reviewedLow
Why 89
Security85
Provenance95
Maintenance100
Licence100
Adoption73
Files (8)
- SKILL.md
- references/atlas.md
- references/interpretation.md
- references/model-api.md
- scripts/_common.py
- scripts/atlas_link.py
- scripts/atlas_query.py
- scripts/score_variants.py