Agent skills you can check before you install
Public SKILL.md skills from GitHub repositories with 50+ stars and from the vendors themselves, scanned and scored. Install any of them with one command in Claude Code, Cursor, Codex, GitHub Copilot or Gemini CLI.
49,492 skills from 2,391 repositories · updated 6 hours ago
49,492 skills
- waypoint-bioK-Dense-AI/scientific-agent-skillsSupports work with Outpost Bio's open microbiome foundation models - the Waypoint checkpoints (Waypoint-6m, Waypoint-45m, Waypoint-170m), the Atlas pretraining corpus, the Compass eight-task benchmark, or the `waypoint` CLI from the `waypoint-bio` package. Covers embedding microbiome samples, fine-tuning on taxonomic abundance data, benchmarking a checkpoint on Compass, pretraining a GPT-2 model on taxonomic abundance profiles, and converting MetaPhlAn, Kraken2, QIIME 2, or MGnify abundance tables into waypoint format.EngineeringNo warnings★ 56.1K↓ —
- onekgpdK-Dense-AI/scientific-agent-skillsQueries the 1000 Genomes Project dataset (3,202 whole-genome-sequenced individuals, GRCh38) at the level of individual participants. Use when a question is about individuals or variants in the 1000 Genomes Project cohort: which individuals carry variants matching specific criteria in a gene or region, which individuals are homozygous-reference at a position, which variants exist in the dataset or carried by specified individuals in a gene or region, the relatedness between two specified individuals. Variants are returned with 1000 Genomes allele frequencies (AF), gnomAD v4.1 exome and genome AF, AlphaMissense score, and HGVSp annotations.ScienceNo warnings★ 56.1K↓ —Also in 2 other repos
- ontology-term-resolutionK-Dense-AI/scientific-agent-skillsResolves free-text scientific labels to ontology term IDs and validates existing CURIEs against the EBI Ontology Lookup Service (OLS4). Also looks up prefixes in Bioregistry, resolves compact identifiers via Identifiers.org, maps lab shorthand with ZOOMA, and builds Ontobee term pages. Use whenever an ontology identifier must be produced or checked - annotating tissue, cell type, disease, phenotype, assay, chemical, organism, sex, or developmental stage fields; preparing metadata for GEO, ENA, BioSamples, CELLxGENE, HCA, or ISA-Tab submission; auditing a metadata table of term IDs; checking whether a term is obsolete and what replaced it; or deciding HPO vs HP. Triggers include "ontology term", "ontology ID", "CURIE", "controlled vocabulary", "UBERON", "CL:", "MONDO", "HPO", "EFO", "ChEBI", "NCBITaxon", "GO term", "PATO", "Zooma", "Bioregistry", "Identifiers.org", "Ontobee", "annotate this tissue/cell type/disease", and any request to emit or verify an identifier shaped like PREFIX:0001234.ScienceNo warnings★ 56.1K↓ —
- deepchemK-Dense-AI/scientific-agent-skillsBuilds molecular property prediction and MoleculeNet workflows with DeepChem, including SMILES featurization, scaffold or grouped holdouts, masked labels, graph models and explicit pretrained encoder transfer. Used for ADMET, toxicity, solubility and chemistry ML when DeepChem data/model contracts and scientific validation are needed.ScienceNo warnings★ 56.1K↓ —Also in 1 other repo
- experimental-designK-Dense-AI/scientific-agent-skillsDesigns experiments and studies BEFORE data is collected — choosing a design, randomizing, blocking, and laying out treatment combinations so results are interpretable. Use whenever someone is planning a study, asks how to assign subjects/samples to groups, mentions randomization, blocking, stratification, controls, factorial or fractional-factorial designs, design of experiments (DOE), screening many factors, response-surface optimization, crossover or repeated-measures or split-plot designs, cluster/group randomization, Latin squares, plate layouts, batch/run-order effects, replication vs. pseudoreplication, or sequential/adaptive/group-sequential designs. Trigger even for informal phrasings like "how should I set up this experiment", "how do I avoid confounding", "what's the best way to test these 6 factors", or "assign these mice to conditions". For computing the sample size or power once the design is chosen, use statistical-power; for analyzing data already collected, use statistical-analysis.DesignNo warnings★ 56.1K↓ —
- scientific-writingK-Dense-AI/scientific-agent-skillsDrafts, revises, and audits scientific manuscripts or reports with explicit evidence provenance, reporting-guideline coverage, authorship accountability, confidentiality controls, and local consistency checks. Use for manuscript sections, references, declarations, tables, figures, or submission preparation when scientific accuracy and traceability matter.ScienceNo warnings★ 56.1K↓ —
- gke-ai-troubleshooting-tpu-vbar-oomgoogle/skillsDiagnoses and prevents vbar_control_agent segfaults, out-of-memory (OOM) errors, and TPU device initialization failures on TPU v6e nodes in GKE caused by race conditions during TPU device resets or high-frequency metrics polling. Use when troubleshooting vbar_control_agent crashes, memory cgroup OOMs in serial console logs, tpu-device-plugin metrics checksum corruption errors, or custom TPU metrics collection conflicts on GKE TPU v6e nodes. Don't use for general non-TPU container OOM troubleshooting or standard GKE node lifecycle operations.OfficialProductivityNo warnings★ 21.9K↓ —
- nmrglueK-Dense-AI/scientific-agent-skillsProcesses calibrated one-dimensional complex NMR free-induction decays with nmrglue into phased spectra, peak candidates, and signed integration regions. Use for raw 1D NMR processing, ppm-axis verification, apodization, Fourier transformation, manual phasing, baseline correction, or reproducible spectral integration.PlanningNo warnings★ 56.1K↓ —Also in 2 other repos
- treatment-plansK-Dense-AI/scientific-agent-skillsFormats and structurally validates local treatment-plan documentation after clinical decisions have already been supplied and verified by authorized licensed professionals. Use for source traceability, clinician-authored intervention records, goals and checkpoints, shared-decision records, reconciliation handoffs, and release gates—not for clinical decision-making.PlanningNo warnings★ 56.1K↓ —
- developer-device-platform-basicsgoogle/skillsProvides guidance and instructions on managing remote devices on Developer Device Platform (DDP). Use when reserving remote Android devices, establishing connection tunnels, checking session status, or extending/cancelling leases. Don't use for iOS or local device/hardware inquiries.OfficialOtherNo warnings★ 21.9K↓ —
- seo-new-keywords-researchzhuyansen/new-term-radarTurn new AI names or unstructured AI market signals into a keyword priority table. For each name it finds the generic search terms downstream of it, screens them for relevance, and checks novelty, demand size and momentum against Google Ads volume and DataForSEO Trends (an estimate of Google search interest), ending in prioritize, watch or skip. Use when the user has new model, product or repository names (or an AI listening report, a batch of posts, a changelog) and asks which keywords to build pages or tools for. Runs the new-term-radar command line; needs an AISA_API_KEY, and a GOANYAPI_API_KEY improves it.ScienceNo warnings★ 2.1K↓ —
- nature-responseYuan1z0825/nature-skillsDraft, audit, or revise responses to peer review, revision cover letters, and marked-manuscript or LaTeX revision packages. Use for 审稿意见回复、逐点回复、返修信、 rebuttals and edits to existing response drafts. Initial-submission materials belong to nature-writing; simulated peer review belongs to nature-reviewer.WritingNo warnings★ 52.2K↓ —
- nature-downloaderYuan1z0825/nature-skillsUse when a user needs lawful academic full text, CNKI institutional access, English OA retrieval, publisher API access, institutional browser fallback, or supporting information downloads.BrowserNo warnings★ 52.2K↓ —
- frame-a-proposalinkeep/open-knowledgeFrame a new design proposal (RFC-shape) under proposals/ — problem before solution, named beneficiary and observable change, real alternatives, honest drawbacks, and a live open-questions backlog. Read when asked to frame a proposal, write an RFC, propose a design, pitch a change, draft a PRD-style design doc, or open a design proposal for review. Do NOT read to record a decision after it is accepted (use record-a-decision), to write an implementation spec (use write-a-spec), to write a postmortem (use write-a-postmortem), or to review or critique an existing design (use review-a-design).DesignNo warnings★ 4.8K↓ —
- differential-auditpedrohcgs/claude-code-my-workflowCompare two implementations of the same thing — a port (R↔Python↔Stata), a reimplementation, a replication package, a refactor, or a new version against the old — so that agreement means something. Freeze inputs first, inventory every expected output, test the comparator itself, compare every channel (not just the headline number), and give each divergence a stable ID and a smallest witness. Use for cross-language parity, replication, upgrade/regression gates, or whenever "the numbers match" is about to license a claim.TestingNo warnings★ 1.7K↓ —
- conversion-trackingcoreyhaines31/marketingskillsSet up, audit, verify, or fix website conversion tracking. Use when the conversion is a form submission, booked meeting, chat, phone call, signup, or purchase; when conversions must reach Google Ads, Meta, GA4, LinkedIn, TikTok, or Microsoft Ads; when the work involves GTM tags and dataLayer events, pixels, the Conversions API (CAPI), Enhanced Conversions, server-side tagging, or gclid and fbclid capture; or when the user reports conversion problems like "conversions stopped", "double counting", "spend but no conversions", "GA4 and Google Ads don't match", or an Unverified or Inactive status. Covers lead gen and ecommerce. Always fire on confirmed success, never the submit click; verify a test conversion arrives; diagnose before changing anything; offer free and native paths alongside paid ones and disclose partner tools. For tracking plans and UTMs, see analytics. For attribution models, see attribution. For campaigns and bidding, see ads. For CRM lead-stage design, see revops.MarketingNo warnings★ 58.5K↓ —
- simpyK-Dense-AI/scientific-agent-skillsBuilds, inspects, tests, and analyzes bounded process-based discrete-event simulations with SimPy. Use for event scheduling, resource queues, interrupts, monitoring, independent replications, warm-up, and reproducible output analysis.TestingNo warnings★ 56.1K↓ —Also in 2 other repos
- nature-paper-to-patentYuan1z0825/nature-skillsTurn research papers or inventor materials into evidence-grounded Chinese invention patent drafts and technical disclosures. Use for 技术交底书、专利撰写、现有技术对比 and Chinese DOCX patent packages; not general manuscript writing.ScienceNo warnings★ 52.2K↓ —
- cellprofilerK-Dense-AI/scientific-agent-skillsRuns reproducible CellProfiler microscopy pipelines for nuclear segmentation, cell counts, and per-object fluorescence measurements. Supports image/channel manifests, headless batch execution, segmentation overlays, and measurement QC for 2D fluorescence assays.MediaNo warnings★ 56.1K↓ —
- mandateLeoYeAI/agent-master-skillsUse when enforcing spend limits on AI agent wallets, validating transactions before signing, configuring allowlists or approval workflows, detecting prompt injection in agent reasoning, scanning codebases for unprotected wallet calls, or auditing agent transaction history. Works with OpenClaw, Claude Code, GOAT, AgentKit, ElizaOS. Supports Bankr, Locus, Sponge, CDP wallets. Non-custodial: private keys never leave your machine.EngineeringNo warnings★ 2.2K↓ —
- research-with-sourcesinkeep/open-knowledgeInvestigate a topic against preserved sources and write a draft-status research article under `research/` in a Knowledge Base project (the `knowledge-base` starter pack). Read when asked to research a topic, compare options, synthesize sources, gather evidence, or extend an existing research doc. Carries the full procedure: scan existing coverage, agree a research rubric, capture every source verbatim before analyzing, write the article incrementally so a crash never loses work, cite every claim, and link it back into the graph. Does not promote findings to canonical knowledge — that is the sibling `consolidate-notes` skill, after a decision lands.ScienceNo warnings★ 4.8K↓ —
- scikit-bioK-Dense-AI/scientific-agent-skillsBiological data toolkit. Sequence analysis, alignments, phylogenetic trees, diversity metrics (alpha/beta, UniFrac), ordination (PCoA), PERMANOVA, FASTA/Newick I/O, for microbiome analysis.ScienceNo warnings★ 56.1K↓ —
- chainaiLeoYeAI/agent-master-skillsEthereum & EVM blockchain CLI skill — sign messages, send tokens, swap via 1inch Fusion, check balances, broadcast transactions, and manage wallets across Ethereum and BNB Smart Chain.EngineeringNo warnings★ 2.2K↓ —
- torchdrugK-Dense-AI/scientific-agent-skillsBuilds and troubleshoots TorchDrug 0.2.1 workflows for molecular graphs, property prediction, self-supervised pretraining, molecule generation, retrosynthesis, protein representation learning, and knowledge graph reasoning. Use when code imports torchdrug or needs its datasets, models, tasks, or Engine.ScienceNo warnings★ 56.1K↓ —Also in 1 other repo
pathml
K-Dense-AI/scientific-agent-skills
DocumentsUpdated 3 days ago
From the author
Supports local computational pathology research with PathML: slide loading and tiling, preprocessing and QC, h5path storage, multiplex quantification, spatial graphs, and bounded model inference. Use for whole-slide H&E, CODEX, Vectra, Mesmer, HoVer-Net, and HACTNet workflows.
Install
npx skills add K-Dense-AI/scientific-agent-skills --skill pathml -a claude-code
Installs to .claude/skills/pathml/ · Each command fetches the skill straight from GitHub with the open skills CLI.
Download .zip
Byte-identical to the scanned commit, with the repository’s licence and a SOURCE.txt.
What it can touch
Runs bundled scriptsUses the networkLicence: MIT
Safety checks on SKILL.md
- Uses sudoLow
- Ships scripts we have not reviewedLow
Why 89
Security85
Provenance95
Maintenance100
Licence100
Adoption73
Files (13)
- SKILL.md
- references/data_management.md
- references/graphs.md
- references/image_loading.md
- references/machine_learning.md
- references/multiparametric.md
- references/preprocessing.md
- scripts/_common.py
- scripts/image_qc.py
- scripts/plan_inference.py
- scripts/plan_pipeline.py
- scripts/slide_manifest.py
- +1 more