Agent skills you can check before you install
Public SKILL.md skills from GitHub repositories with 50+ stars and from the vendors themselves, scanned and scored. Install any of them with one command in Claude Code, Cursor, Codex, GitHub Copilot or Gemini CLI.
49,409 skills from 2,375 repositories · updated 13 hours ago
49,407 skills
- iso-standards-readinessK-Dense-AI/scientific-agent-skillsPrepares and structurally reviews readiness evidence for ISO management-system and laboratory-competence standards - ISO 13485 medical device QMS, ISO 14971 device risk management, ISO/IEC 17025 testing and calibration laboratories, and ISO 15189 medical laboratories. Use when organizing declared scope, controlled documents, risk-management files, scope of accreditation, traceability, CAPA, external-provider controls, or bounded local evidence manifests, and when separating ISO certification from laboratory accreditation, FDA QMSR inspection, CLIA certification, MDSAP, and EU MDR/IVDR evidence boundaries. Not for legal applicability, compliance, certification, or accreditation decisions; contains no clause text.TestingNo warnings★ 56K↓ —
- ontology-term-resolutionK-Dense-AI/scientific-agent-skillsResolves free-text scientific labels to ontology term IDs and validates existing CURIEs against the EBI Ontology Lookup Service (OLS4). Also looks up prefixes in Bioregistry, resolves compact identifiers via Identifiers.org, maps lab shorthand with ZOOMA, and builds Ontobee term pages. Use whenever an ontology identifier must be produced or checked - annotating tissue, cell type, disease, phenotype, assay, chemical, organism, sex, or developmental stage fields; preparing metadata for GEO, ENA, BioSamples, CELLxGENE, HCA, or ISA-Tab submission; auditing a metadata table of term IDs; checking whether a term is obsolete and what replaced it; or deciding HPO vs HP. Triggers include "ontology term", "ontology ID", "CURIE", "controlled vocabulary", "UBERON", "CL:", "MONDO", "HPO", "EFO", "ChEBI", "NCBITaxon", "GO term", "PATO", "Zooma", "Bioregistry", "Identifiers.org", "Ontobee", "annotate this tissue/cell type/disease", and any request to emit or verify an identifier shaped like PREFIX:0001234.ScienceNo warnings★ 56K↓ —
- system-designwondelai/skillsDesign scalable distributed systems using structured approaches for load balancing, caching, database scaling, and message queues. Use when the user mentions "system design", "scale this", "high availability", "rate limiter", "design a URL shortener", "design Twitter", "design Uber", "design a news feed", "system design interview", "capacity planning", or "distributed architecture". Also trigger when estimating infrastructure requirements, choosing between microservices and monoliths, or designing for millions of concurrent users. Covers common system designs (TinyURL, feeds, chat) and back-of-the-envelope estimation. For data fundamentals, see ddia-systems. For resilience, see release-it.DesignNo warnings★ 2.6K↓ —Also in 2 other repos
- dbt_ingestKaelio/ktxMap dbt `schema.yml` / `properties.yml` models and sources into ktx semantic-layer overlays and column notes. Covers `sources:` vs `models:`, column `data_tests` (not_null, unique, accepted_values, relationships), and how bundle-time writes complement manifest backfill from git sync. Load when the WorkUnit's `skillNames` includes `dbt_ingest` or when raw files are dbt YAML under `models/` / `sources/`.DataNo warnings★ 1.6K↓ —
- design-sprintwondelai/skillsRun a structured 5-day process to prototype, test, and validate product ideas with real users. Use when the user mentions "design sprint", "validate before we build", "rapid prototype", "test with users", or "should we build this". Also trigger when a team is stuck in endless debate over a high-stakes product decision, or wants to de-risk a costly idea before investing in development. Covers mapping, sketching, deciding, prototyping, and testing across Monday-Friday. For ongoing experimentation and MVPs, see lean-startup. For customer job analysis, see jobs-to-be-done. For non-leading user interviews, see mom-test.DesignNo warnings★ 2.6K↓ —Also in 2 other repos
- dev-refactorcodeaholicguy/ai-devkitAI DevKit · Systematic structural or multi-file refactors across any stack while preserving behavior and public contracts. Use for reorganizing modules, boundaries, naming, APIs/contracts, staged refactor plans, or refactor risk review.EngineeringNo warnings★ 1.7K↓ —
- scenario-planningcbrock84/headcountPlans under genuine uncertainty — building scenarios, identifying which assumptions are load-bearing, setting early-warning indicators, and stress-testing a plan against futures rather than forecasting one. Use this when a decision depends on something unknowable, when a plan assumes conditions that may not hold, before a large irreversible commitment, or when a market, regulatory, or technology shift could invalidate the strategy.PlanningNo warnings★ 2.6K↓ —
- experimental-designK-Dense-AI/scientific-agent-skillsDesigns experiments and studies BEFORE data is collected — choosing a design, randomizing, blocking, and laying out treatment combinations so results are interpretable. Use whenever someone is planning a study, asks how to assign subjects/samples to groups, mentions randomization, blocking, stratification, controls, factorial or fractional-factorial designs, design of experiments (DOE), screening many factors, response-surface optimization, crossover or repeated-measures or split-plot designs, cluster/group randomization, Latin squares, plate layouts, batch/run-order effects, replication vs. pseudoreplication, or sequential/adaptive/group-sequential designs. Trigger even for informal phrasings like "how should I set up this experiment", "how do I avoid confounding", "what's the best way to test these 6 factors", or "assign these mice to conditions". For computing the sample size or power once the design is chosen, use statistical-power; for analyzing data already collected, use statistical-analysis.DesignNo warnings★ 56K↓ —
- scientific-writingK-Dense-AI/scientific-agent-skillsDrafts, revises, and audits scientific manuscripts or reports with explicit evidence provenance, reporting-guideline coverage, authorship accountability, confidentiality controls, and local consistency checks. Use for manuscript sections, references, declarations, tables, figures, or submission preparation when scientific accuracy and traceability matter.ScienceNo warnings★ 56K↓ —
- spss-amos-sembrycewang-stanford/Auto-Empirical-Research-SkillsQuestionnaire structural equation modeling in the SPSS + AMOS workflow that Chinese management, psychology, education, nursing and tourism theses use — data cleaning of an SPSS .sav file, reverse coding, straight-lining, demographics, Harman common-method-bias test, Cronbach's alpha / CITC reliability, EFA (KMO, Bartlett), CFA convergent validity (standardized loadings, CR, AVE), discriminant validity (Fornell-Larcker, HTMT), model fit (chi2/df, CFI, TLI, RMSEA, SRMR), structural paths and hypothesis tests, bootstrap mediation with specific indirect effects, multi-group measurement invariance, and Hayes PROCESS models 1/4/6/7/8/14. One spec card drives an R/lavaan engine set to AMOS defaults and writes ready-to-run SPSS syntax (.sps), AMOS Program Editor VB.NET code, AMOS user-defined estimands, an AMOS drawing checklist with the numbers AMOS should show, Chinese three-line tables in Word, a results-chapter draft and a transparent model-modification log. Use when the user mentions SPSS, AMOS, SEM, structural TestingNo warnings★ 4.9K↓ —
- opentrons-integrationK-Dense-AI/scientific-agent-skillsAuthors, reviews, migrates, simulates, and troubleshoots official Opentrons Python Protocol API v2 protocols for Flex and OT-2 robots. Use for robot-specific liquid handling, deck and labware setup, pipettes, modules, runtime parameters, liquid classes, and Opentrons App analysis. Use pylabrobot instead when one workflow must support multiple robot vendors.DocumentsNo warnings★ 56K↓ —
- ux-heuristicswondelai/skillsEvaluate and improve interface usability using heuristic analysis. Use when the user mentions "usability audit", "users are confused", "form usability", "navigation problems", "Nielsen heuristics", "cognitive walkthrough", or "is this easy to use". Also trigger when reviewing a design for usability issues, improving form-completion rates, or evaluating information architecture and navigation. Covers Krug's laws, Nielsen's 10 heuristics, severity ratings, dark-pattern recognition, and accessibility. For visual design fixes, see refactoring-ui. For conversion-focused audits, see cro-methodology.DesignNo warnings★ 2.6K↓ —Also in 2 other repos
- literature-reviewK-Dense-AI/scientific-agent-skillsConducts systematic, scoping, and narrative literature reviews using PubMed, arXiv, bioRxiv, Semantic Scholar, and other appropriate sources. Use for research synthesis, reproducible literature searches, screening, citation checking, or preparing Markdown and PDF reviews. Tracks search coverage, records versus studies, and evidence limitations; supports meta-analysis planning but does not supply a meta-analysis engine.EngineeringNo warnings★ 56K↓ —
- omero-integrationK-Dense-AI/scientific-agent-skillsInspects and automates microscopy data workflows against OMERO.server with omero-py, BlitzGateway, OMERO CLI, tables, annotations, ROIs, rendering, and documented OMERO.web APIs. Use this skill for scoped OMERO inventory, metadata export, import/export planning, or reviewed write workflows.MediaNo warnings★ 56K↓ —
- huashu-info-searchalchaincyf/huashu-skills多渠道搜索新产品新技术，交叉验证后存入知识库。当用户提到"最新信息"、"新产品"、"搜索资料"、"查资料"、"了解XX"时使用。OtherNo warnings★ 2.2K↓ —
- cellprofilerK-Dense-AI/scientific-agent-skillsRuns reproducible CellProfiler microscopy pipelines for nuclear segmentation, cell counts, and per-object fluorescence measurements. Supports image/channel manifests, headless batch execution, segmentation overlays, and measurement QC for 2D fluorescence assays.MediaNo warnings★ 56K↓ —
- waypoint-bioK-Dense-AI/scientific-agent-skillsSupports work with Outpost Bio's open microbiome foundation models - the Waypoint checkpoints (Waypoint-6m, Waypoint-45m, Waypoint-170m), the Atlas pretraining corpus, the Compass eight-task benchmark, or the `waypoint` CLI from the `waypoint-bio` package. Covers embedding microbiome samples, fine-tuning on taxonomic abundance data, benchmarking a checkpoint on Compass, pretraining a GPT-2 model on taxonomic abundance profiles, and converting MetaPhlAn, Kraken2, QIIME 2, or MGnify abundance tables into waypoint format.EngineeringNo warnings★ 56K↓ —
- understand-figmaEgonex-AI/Understand-AnythingAnalyze a Figma file via the Figma REST API and generate an interactive design knowledge graph (pages, screens, components, component sets, instances, design tokens) with a kind:"design" dashboard.DesignNo warnings★ 90.2K↓ —
- verfahrenKlotzkette/claude-fuer-deutsches-rechtFür Verfahren — Behörden und Gerichte: ordnet Norm, Beweislast und Gegenargument; Ergebnis: Prüfprodukt mit Risiko und nächstem Schritt.OtherNo warnings★ 1.8K↓ —
- scikit-bioK-Dense-AI/scientific-agent-skillsBiological data toolkit. Sequence analysis, alignments, phylogenetic trees, diversity metrics (alpha/beta, UniFrac), ordination (PCoA), PERMANOVA, FASTA/Newick I/O, for microbiome analysis.ScienceNo warnings★ 56K↓ —
- understand-domainEgonex-AI/Understand-AnythingExtract business domain knowledge from a codebase and generate an interactive domain flow graph. Works standalone (lightweight scan) or derives from an existing /understand knowledge graph.OtherNo warnings★ 90.2K↓ —
- improve-retentionwondelai/skillsDiagnose and fix retention problems using behavior design (B=MAP). Use when the user mentions "users sign up but dont stick around", "activation rate", "onboarding friction", "retention metrics", "why users dont complete", "churn analysis", or "aha moment". Also trigger when analyzing cohort retention curves, designing activation milestones, reducing time-to-value for new users, or investigating why users quit after their first session. Covers the Ability Chain, prompt design, and tiny behaviors that compound. For habit loops and variable rewards, see hooked-ux. For intrinsic motivation, see drive-motivation.DesignNo warnings★ 2.6K↓ —Also in 2 other repos
- arbeitnehmer-statusKlotzkette/claude-fuer-deutsches-rechtFür Arbeitnehmer Status: ordnet Norm, Beweislast und Gegenargument; Ergebnis: Prüfprodukt mit Risiko und nächstem Schritt.OtherNo warnings★ 1.8K↓ —
- treatment-plansK-Dense-AI/scientific-agent-skillsFormats and structurally validates local treatment-plan documentation after clinical decisions have already been supplied and verified by authorized licensed professionals. Use for source traceability, clinician-authored intervention records, goals and checkpoints, shared-decision records, reconciliation handoffs, and release gates—not for clinical decision-making.PlanningNo warnings★ 56K↓ —
13c-metabolic-flux
K-Dense-AI/scientific-agent-skills
OtherUpdated 2 days ago
From the author
Estimates intracellular metabolic fluxes from steady-state carbon-13 isotope-tracing measurements using validated atom maps, mfapy isotope simulation, constrained multistart fitting, and flux-profile diagnostics. Use for 13C-MFA, carbon tracing, mass isotopomer distributions (MDVs/MIDs), positional isotopomers, parallel tracer experiments, and determining whether labeling data constrain a pathway flux. Distinguishes measured-label inference from COBRA flux balance analysis and flags experiments requiring nonstationary MFA.
Install
npx skills add K-Dense-AI/scientific-agent-skills --skill 13c-metabolic-flux -a claude-code
Installs to .claude/skills/13c-metabolic-flux/ · Each command fetches the skill straight from GitHub with the open skills CLI.
Download .zip
Byte-identical to the scanned commit, with the repository’s licence and a SOURCE.txt.
What it can touch
Runs bundled scriptsUses the networkLicence: MIT
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Files (16)
- SKILL.md
- assets/branch-fluxes.json
- assets/branch-identifiable.json
- assets/branch-model.json
- assets/branch-unresolved.json
- assets/mfapy-license.txt
- assets/requirements.txt
- assets/tca-fluxes.json
- assets/tca-model.json
- assets/tca-reference-mdv.json
- assets/tca-tracer.json
- references/inference.md
- +4 more