Agent skills you can check before you install
Public SKILL.md skills from GitHub repositories with 50+ stars and from the vendors themselves, scanned and scored. Install any of them with one command in Claude Code, Cursor, Codex, GitHub Copilot or Gemini CLI.
49,492 skills from 2,391 repositories · updated 4 hours ago
49,492 skills
- dnanexus-integrationK-Dense-AI/scientific-agent-skillsBuilds and operates reproducible genomics workloads on DNAnexus with the dx CLI, dxpy, apps/applets, native workflows, dxCompiler, and Nextflow. Supports DNAnexus data transfers, dxapp.json development, execution monitoring, workflow import, and project automation.ScienceNo warnings★ 56.1K↓ —
- gke-ai-troubleshooting-jobset-interruptiongoogle/skillsDiagnoses GKE JobSet interruptions, restarts, and preemptions for AI/ML training workloads autonomously. Use when troubleshooting JobSet restart loops, spot VM preemptions, node readiness failures, host VM issues, or coordinator worker crashes. Don't use for general GKE cluster creation, basic workload deployment, or non-JobSet application issues.OfficialDevOpsNo warnings★ 21.9K↓ —
- convert-pdf-to-mdgithub/awesome-copilotConverts PDF (.pdf) documents into Markdown so their contents can be accurately analyzed, summarized, searched, or extracted from. Use this skill whenever the user shares, references, or asks about a .pdf file — even if they don't say "convert" or "markdown" explicitly. This includes requests to "read", "summarize", "review", "extract data from", "compare", or "analyze" a PDF report, paper, invoice, form, contract, or scanned document. Always run the bundled conversion script to produce Markdown first; do not attempt to parse PDF content directly or write ad-hoc extraction code. Also use this skill for batch requests involving a whole folder of PDF documents. IMPORTANT: When the user references a folder or set of documents containing multiple file types (.pdf, .docx, .xlsx), invoke ALL three sibling skills — convert-pdf-to-md, convert-word-to-md, and convert-excel-to-md — so no file type is silently skipped.DocumentsNo warnings★ 40.8K↓ —
- embedded-payment-keycisco-ai-defense/skill-scannerDemonstrate a credential-shaped payment key embedded in instructionsOtherNo warnings★ 2.7K↓ —
- learning-materials-designcbrock84/headcountDesigns worksheets, workbooks and practice material that actually teach — sequencing difficulty, managing cognitive load, writing instructions a child can follow unaided, and building answer keys that hold up. Use this to design or fix a worksheet or workbook, decide how much practice a skill needs, structure a page so it can be completed without an adult reading it aloud, or diagnose material that looks right and does not work.DesignNo warnings★ 2.6K↓ —
- what-if-oracleK-Dense-AI/scientific-agent-skillsSupports structured what-if scenario analysis for research planning, experimental contingencies, and scientific project decisions. Explores favorable, reference, adverse, wild-card, contrarian, and second-order scenarios with explicit assumptions, evidence, and decision triggers. Use to stress-test a research plan under uncertainty; scenario narratives do not estimate causal effects or calibrated forecast probabilities.TestingNo warnings★ 56.1K↓ —
- backupLeoYeAI/agent-master-skillsBackup and restore openclaw configuration, skills, commands, and settings. Sync across devices, version control with git, automate backups, and migrate to new machines.EngineeringNo warnings★ 2.2K↓ —
- primer-designK-Dense-AI/scientific-agent-skillsDesigns and audits PCR and RT-qPCR primers with Primer3, explicit thermodynamic conditions, reference-based off-target amplification searches, and traceable sequence coordinates. Use for designing primer pairs, checking existing primers, exon-junction or isoform-specific assays, variant masking, cloning tails, multiplex compatibility, and interpreting Primer-BLAST results. Includes bounded local in-silico PCR and BLAST screening; distinguishes computational candidates from experimentally validated assays.DesignNo warnings★ 56.1K↓ —
- nwb-conversionK-Dense-AI/scientific-agent-skillsConverts neuroscience acquisition data to Neurodata Without Borders files with NeuroConv and PyNWB, preserves metadata and timebases, checks evidence-based clock alignment, and produces schema validation, NWB Inspector findings and round-trip checks. Use for NWB conversion and synchronization of planar single-channel two-photon TIFF imaging plus timestamped behavioral position CSV; this skill does not perform spike sorting or claim tested support for arbitrary acquisition formats.MarketingNo warnings★ 56.1K↓ —
- gutachten-uebungKlotzkette/claude-fuer-deutsches-rechtFür Gutachtenstil-Übung: ordnet Norm, Beweislast und Gegenargument; Ergebnis: Prüfprodukt mit Risiko und nächstem Schritt.OtherNo warnings★ 1.8K↓ —
- pkpd-modelingK-Dense-AI/scientific-agent-skillsPharmacokinetic and pharmacodynamic modelling and simulation - non-compartmental analysis, compartmental and population PK, PK/PD and exposure-response, TMDD, PBPK orientation, bioequivalence, allometric scaling and first-in-human dose, drug interaction prediction, and Bayesian therapeutic drug monitoring. Use when analysing concentration-time data, deriving exposure metrics, fitting PK or PD models, or evaluating dosing regimens. Triggers include "pharmacokinetics", "pharmacodynamics", "PK/PD", "NCA", "non-compartmental", "AUC", "Cmax", "lambda z", "half-life", "clearance", "volume of distribution", "compartmental model", "population PK", "popPK", "NONMEM", "nlmixr2", "Pharmpy", "Monolix", "exposure-response", "Emax", "EC50", "indirect response", "effect compartment", "TMDD", "PBPK", "bioequivalence", "RSABE", "ABEL", "allometric scaling", "first-in-human", "MABEL", "drug-drug interaction", "DDI", "ICH M12", "concentration-QTc", "therapeutic drug monitoring", "MIPD", and "dosing regimen".OtherNo warnings★ 56.1K↓ —
- neuropixels-analysisK-Dense-AI/scientific-agent-skillsAnalyzes Neuropixels extracellular recordings end-to-end with SpikeInterface. Covers loading SpikeGLX/Open Ephys/NWB data, preprocessing, drift/motion correction, Kilosort4 (and CPU) spike sorting, quality metrics, and unit curation (threshold-based, model-based UnitRefine, and AI-assisted visual review). Use when working with Neuropixels 1.0/2.0 recordings, spike sorting, or extracellular electrophysiology analysis.EngineeringNo warnings★ 56.1K↓ —
- huashu-motionalchaincyf/huashu-motionMotion graphics, launch videos and explainers as editable code. A director picks the motion language for your product; you point at frames to change them. 动画、发布片、解说视频，指着画面改。WritingNo warnings★ 2.3K↓ —
- deepchemK-Dense-AI/scientific-agent-skillsBuilds molecular property prediction and MoleculeNet workflows with DeepChem, including SMILES featurization, scaffold or grouped holdouts, masked labels, graph models and explicit pretrained encoder transfer. Used for ADMET, toxicity, solubility and chemistry ML when DeepChem data/model contracts and scientific validation are needed.ScienceNo warnings★ 56.1K↓ —Also in 1 other repo
- hivemind-graphactiveloopai/hivemindQuery the local code graph (functions, classes, calls, imports) through the Deeplake mount at memory/graph/. Use when the user asks structural questions about the codebase — "what calls X?", "what does Y import?", "where is Z defined?", "what's the architecture / which subsystems exist?", "what's the impact of changing this?". The graph is an AST-derived map of the repo, queried as files (no build needed — it rebuilds automatically).PlanningNo warnings★ 1.6K↓ —
- portaljs-add-geodatopian/portaljsAuto-ingest a geospatial file (GeoJSON, Shapefile, GeoPackage, KML/KMZ, FlatGeobuf, CSV-with-geometry) into a PortalJS portal on the user's own machine, with no server. Normalizes CRS to EPSG:4326, derives a PMTiles render tier and a GeoParquet query tier, pushes all three artifacts to Cloudflare R2 via Git LFS, and appends one dual-tier datasets.json entry the showcase auto-renders. Use when the source is a vector geo format that needs a map or spatial-query view.DevOpsNo warnings★ 2.4K↓ —
- alphagenomeK-Dense-AI/scientific-agent-skillsLooks up precomputed AlphaGenome Atlas effects for any GRCh38 single-nucleotide variant (AVI score with Phred and 18 SHAP feature attributions, plus raw and quantile scores for RNA-seq, DNase, ATAC, ChIP-TF, ChIP-histone, CAGE, PRO-cap, splicing, polyadenylation and contact-map tracks), scores variants or scans windows on demand with the AlphaGenome model for human and mouse (variant scoring, in silico mutagenesis, REF-versus-ALT track prediction), and builds Atlas website deep links. Use when the user mentions AlphaGenome, AlphaGenome Atlas, AVI or AlphaGenome Variant Impact, DeepMind variant effect prediction, or wants to prioritise or mechanistically interpret non-coding, regulatory, splicing, enhancer, promoter, or chromatin-accessibility effects of SNVs from a VCF, credible set, or region. Research use only; not a clinical tool.ScienceNo warnings★ 56.1K↓ —
- postlaufKlotzkette/claude-fuer-deutsches-rechtFür Postlauf um 11 Uhr: ordnet Norm, Beweislast und Gegenargument; Ergebnis: Prüfprodukt mit Risiko und nächstem Schritt.OtherNo warnings★ 1.8K↓ —
- ai-legal-opsKlotzkette/claude-fuer-deutsches-rechtFür digitale Werkzeuge und Legal Ops in der Kanzlei: ordnet Norm, Beweislast und Gegenargument; Ergebnis: Prüfprodukt mit Risiko und nächstem Schritt.LegalNo warnings★ 1.8K↓ —
- chief-revenue-officercbrock84/headcountAn agent organization structured as a company — 15+ departments, 125+ skills, each independently installable, citing the standards and regulators that settle the question. Runs in Claude Code and ChatGPT.LegalNo warnings★ 2.6K↓ —
- ressort-bmwsbKlotzkette/claude-fuer-deutsches-rechtFür Ressort-Heranführung BMWSB: ordnet Norm, Beweislast und Gegenargument; Ergebnis: Prüfprodukt mit Risiko und nächstem Schritt.OtherNo warnings★ 1.8K↓ —
- personal-crminkeep/open-knowledgeHow to work in a Personal CRM project (the `entity-vault` starter pack, GBrain-compatible): a typed-entity vault of people, companies, meetings, and concepts, each a dossier with a rewritable summary plus an append-only timeline. Read when the project has these folders, OR when asked to capture notes about a person or company, log a meeting, prep for an upcoming meeting, or answer who someone is and what was last said. Carries the dossier convention and entity-extraction behaviors so that guidance does not live inside template bodies or folder descriptions. Complements the platform `open-knowledge` skill; does not replace it.ProductivityNo warnings★ 4.8K↓ —
- conversion-optimizationwondelai/skillsGuided journey from a leaking conversion flow - landing page, signup, checkout, or in-app onboarding - to a measured, tested funnel. Orchestrates six skills phase by phase - lean-analytics, cro-methodology, storybrand-messaging, hundred-million-offers, influence-psychology, design-everyday-things - each phase carries its full method inline so it runs standalone, asking the user questions at every decision point and recording results in the project docs/ folder (FUNNEL.md, METRICS.md, EXPERIMENTS.md, CONVERSION-OPTIMIZATION-PLAN.md) so the journey resumes across sessions. Use when the user wants to raise conversion on a specific flow, fix checkout or signup abandonment, diagnose onboarding drop-off, or says 'people start but never finish'. With no site yet, use create-website; for a whole-site look, message, and speed audit, improve-website; if the flow converts but needs traffic, grow-website; for in-product engagement and retention, improve-app. For one framework in isolation, invoke that skill directly.MarketingNo warnings★ 2.6K↓ —Also in 2 other repos
- seo-new-keywords-researchzhuyansen/new-term-radarTurn new AI names or unstructured AI market signals into a keyword priority table. For each name it finds the generic search terms downstream of it, screens them for relevance, and checks novelty, demand size and momentum against Google Ads volume and DataForSEO Trends (an estimate of Google search interest), ending in prioritize, watch or skip. Use when the user has new model, product or repository names (or an AI listening report, a batch of posts, a changelog) and asks which keywords to build pages or tools for. Runs the new-term-radar command line; needs an AISA_API_KEY, and a GOANYAPI_API_KEY improves it.ScienceNo warnings★ 2.1K↓ —
pysam
K-Dense-AI/scientific-agent-skills
ScienceUpdated 3 days ago
From the author
Provides Python/HTSlib workflows for genomic files. Used when reading, querying, filtering, or writing SAM/BAM/CRAM, VCF/BCF, FASTA/FASTQ, or tabix data with pysam, including pileup, coverage, indexing, and CRAM references.
Install
npx skills add K-Dense-AI/scientific-agent-skills --skill pysam -a claude-code
Installs to .claude/skills/pysam/ · Each command fetches the skill straight from GitHub with the open skills CLI.
Download .zip
Byte-identical to the scanned commit, with the repository’s licence and a SOURCE.txt.
What it can touch
Runs bundled scriptsUses the networkLicence: MIT
Safety checks on SKILL.md
- Ships scripts we have not reviewedLow
Why 89
Security85
Provenance95
Maintenance100
Licence100
Adoption73
Files (14)
- SKILL.md
- references/alignment_files.md
- references/api_reference.md
- references/common_workflows.md
- references/coordinates_and_indexing.md
- references/cram_and_performance.md
- references/migration_to_0_24.md
- references/sequence_files.md
- references/sources.md
- references/variant_files.md
- scripts/alignment_qc.py
- scripts/filter_alignments.py
- +2 more