Agent skills you can check before you install
Public SKILL.md skills from GitHub repositories with 50+ stars and from the vendors themselves, scanned and scored. Install any of them with one command in Claude Code, Cursor, Codex, GitHub Copilot or Gemini CLI.
47,966 skills from 2,309 repositories · updated 5 hours ago
46,854 skills
- onekgpdK-Dense-AI/scientific-agent-skillsQueries the 1000 Genomes Project dataset (3,202 whole-genome-sequenced individuals, GRCh38) at the level of individual participants. Use when a question is about individuals or variants in the 1000 Genomes Project cohort: which individuals carry variants matching specific criteria in a gene or region, which individuals are homozygous-reference at a position, which variants exist in the dataset or carried by specified individuals in a gene or region, the relatedness between two specified individuals. Variants are returned with 1000 Genomes allele frequencies (AF), gnomAD v4.1 exome and genome AF, AlphaMissense score, and HGVSp annotations.ScienceNo warnings★ 55.4K↓ —Also in 1 other repo
- pathmlK-Dense-AI/scientific-agent-skillsSupports local computational pathology research with PathML: slide loading and tiling, preprocessing and QC, h5path storage, multiplex quantification, spatial graphs, and bounded model inference. Use for whole-slide H&E, CODEX, Vectra, Mesmer, HoVer-Net, and HACTNet workflows.DocumentsNo warnings★ 55.4K↓ —Also in 1 other repo
- migrate-postgres-tables-to-hypertablestimescale/pg-aiguideUse this skill to migrate identified PostgreSQL tables to Timescale/TimescaleDB hypertables with optimal configuration and validation. **Trigger when user asks to:** - Migrate or convert PostgreSQL tables to hypertables - Execute hypertable migration with minimal downtime - Plan blue-green migration for large tables - Validate hypertable migration success - Configure compression after migration **Prerequisites:** Tables already identified as candidates (use find-hypertable-candidates first if needed) **Keywords:** migrate to hypertable, convert table, Timescale, TimescaleDB, blue-green migration, in-place conversion, create_hypertable, migration validation, compression setup Step-by-step migration planning including: partition column selection, chunk interval calculation, PK/constraint handling, migration execution (in-place vs blue-green), and performance validation queries.DataNo warnings★ 1.9K↓ —
- aeonK-Dense-AI/scientific-agent-skillsThis skill should be used for time series machine learning tasks including classification, regression, clustering, forecasting, anomaly detection, segmentation, and similarity search. Use when working with temporal data, sequential patterns, or time-indexed observations requiring specialized algorithms beyond standard ML approaches. Particularly suited for univariate and multivariate time series analysis with scikit-learn compatible APIs.PlanningNo warnings★ 55.4K↓ —Also in 1 other repo
- seabornK-Dense-AI/scientific-agent-skillsCreates Seaborn statistical visualizations with pandas integration for distributions, relationships, categorical comparisons, regression displays, pair plots, and heatmaps. Supports function and objects interfaces with explicit aggregation, uncertainty, and missing-data handling. Best suited to static exploratory plots; plotly covers interactive figures and scientific-visualization covers publication styling.DataNo warnings★ 55.4K↓ —Also in 1 other repo
- rowanK-Dense-AI/scientific-agent-skillsRowan is a cloud-native molecular modeling and medicinal-chemistry workflow platform with a Python API. Use for pKa and macropKa prediction, conformer and tautomer ensembles, docking and analogue docking, protein-ligand cofolding, MSA generation, molecular dynamics, permeability, descriptor workflows, and related small-molecule or protein modeling tasks. Ideal for programmatic batch screening, multi-step chemistry pipelines, and workflows that would otherwise require maintaining local HPC/GPU infrastructure.DevOpsNo warnings★ 55.4K↓ —Also in 1 other repo
- seedance-sports-extremeLearnPrompt/awesome-seedanceThe clip lives or dies on the action loop. Write every link from run-up to landing in order, name the physics you want by part, and spend the negative list on flying, hovering and teleporting. Use when the user wants a Seedance 2.5 / 2.0 video prompt for this kind of clip (Sports and extreme stunts; 中文触发词: 体育与极限运动, 体育, 极限运动, 跑酷, 滑板), or asks how published cases of this type were prompted. Read references/cases.md before drafting.MediaNo warnings★ 2.4K↓ —
- arborK-Dense-AI/scientific-agent-skillsApplies Arbor Hypothesis Tree Refinement to research artifacts with repeatable evaluators, including model training, agent harnesses, data synthesis and benchmark optimization. Uses persistent hypotheses, isolated experiments, evidence propagation and held-out candidate comparison for multi-experiment research runs. Includes a standard-library state manager and guidance for the RUC-NLPIR Arbor CLI.ScienceNo warnings★ 55.4K↓ —Also in 1 other repo
- api-designcbrock84/headcountDesigns interfaces that survive their consumers — resource modeling, errors, versioning, pagination, and compatibility. Use this to design a new API, review one before it ships, decide how to version or deprecate, fix an interface consumers keep misusing, or work out whether a change is breaking.DesignNo warnings★ 2.5K↓ —
- pysamK-Dense-AI/scientific-agent-skillsProvides Python/HTSlib workflows for genomic files. Used when reading, querying, filtering, or writing SAM/BAM/CRAM, VCF/BCF, FASTA/FASTQ, or tabix data with pysam, including pileup, coverage, indexing, and CRAM references.ScienceNo warnings★ 55.4K↓ —Also in 1 other repo
- hivemind-goalsactiveloopai/hivemindCreate, track, and read team goals via Hivemind from openclaw. Use whenever the user mentions a goal, objective, target, milestone, or asks to track progress on something measurable. ALSO use when the user says "task", "todo", "work item", "remind me to", "fix X", or any actionable work item — the goal system replaced the legacy `hivemind tasks` CLI and now covers both objectives and tasks.EngineeringNo warnings★ 1.6K↓ —
- pytdcK-Dense-AI/scientific-agent-skillsProvides Therapeutics Data Commons workflows through PyTDC for registry discovery, dataset access, task-aware splits, evaluator metrics, benchmark groups, and bounded molecular-oracle scoring. Use when working with TDC therapeutic ML datasets or benchmarks.ProductivityNo warnings★ 55.4K↓ —Also in 1 other repo
- deepspot-mK-Dense-AI/scientific-agent-skillsGenerates transcriptome-wide virtual spatial transcriptomics from H&E histology with DeepSpot-M. Used for predicted log1p-CPM expression from 224x224 tiles at about 20x, querying the released protein-coding gene panel by symbol, and whole-slide prediction after resolution-aware tiling with histolab.DocumentsNo warnings★ 55.4K↓ —
- geopandasK-Dense-AI/scientific-agent-skillsGuidance and local audit tools for Python workflows that directly use GeoPandas GeoSeries, GeoDataFrame, spatial operations, or vector-data I/O.EngineeringNo warnings★ 55.4K↓ —Also in 1 other repo
- liteparseK-Dense-AI/scientific-agent-skillsLocal document and PDF parsing that returns spatial text with bounding boxes. Use for extracting text from PDFs, DOCX, Office files, and images; running OCR on scans; producing layout-preserved JSON for RAG; batch-ingesting folders of papers; or rendering pages to PNG for multimodal agents. Distinguishing capabilities are spatial text boxes, Markdown, page raster output, and local parsing with optional custom HTTP OCR.DocumentsNo warnings★ 55.4K↓ —Also in 1 other repo
- cobrapyK-Dense-AI/scientific-agent-skillsPerforms constraint-based metabolic modeling with COBRApy, including FBA, pFBA, FVA, gene knockouts, flux sampling, growth media, production envelopes, gap filling, and SBML model validation for systems biology and metabolic engineering.ScienceNo warnings★ 55.4K↓ —Also in 1 other repo
- diagram-designcathrynlavery/diagram-designCreate branded architecture, architecture delta, IT current-state, flowchart, sequence, state machine, ER/data model, timeline, swimlane, quadrant, radar/spider, polar chart (polar/radial lollipop), loop/flywheel, nested, tree, org chart, layer stack, exploded axonometric, axonometric plan, Venn, pyramid/funnel, treemap and marimekko, heatmap, bar and dumbbell, waterfall, line (slopegraph, ridgeline, streamgraph, bump), Gantt and scatter charts (bubble, beeswarm, box plot), high-level, process, medallion, data flow, DP integration, DP security matrix, Sankey, fishbone, Wardley map, kanban, user journey, service blueprint, deployment, dependency graph, UML class, story map, or database schema diagrams as HTML/SVG/PNG, with .drawio, Mermaid, and .excalidraw import, plus lifecycle phase maps, block decomposition trees, and onboarding guidance.DesignNo warnings★ 63.2K↓ —
- generate-imageK-Dense-AI/scientific-agent-skillsGenerates or edits images with AI models through the OpenRouter Image API (Gemini, Seedream, Recraft, GPT-Image, Riverflow). Use for photos, illustrations, artwork, concept art, visual assets, logos, and image editing or compositing from reference images. For flowcharts, circuits, pathways, and other technical diagrams, use the scientific-schematics skill instead.MediaNo warnings★ 55.4K↓ —
- scientific-brainstormingK-Dense-AI/scientific-agent-skillsFacilitates evidence-aware scientific ideation with independent generation, structured discussion, explicit assumptions, transparent evaluation, adversarial review, and decision logs. Use for early-stage research brainstorming or prioritizing candidate directions; hand off empirical validation, study design, ethics or regulatory review, and clinical questions to appropriate experts or skills.ScienceNo warnings★ 55.4K↓ —
- scholar-evaluationK-Dense-AI/scientific-agent-skillsProvides qualitative-first, evidence-traceable developmental review of scholarly works and audit low-stakes research-assessment rubrics with optional local quality controls. Never use for ranking people or consequential decisions.ScienceNo warnings★ 55.4K↓ —
- latchbio-integrationK-Dense-AI/scientific-agent-skillsBuilds, registers, debugs, and operates bioinformatics workflows on Latch using the Python SDK, CLI, Latch Data and Registry, Nextflow, Snakemake, programmatic execution, and Latch MCP. Use when authoring or deploying Latch workflows, configuring resources or interfaces, moving data, integrating Registry, or launching and monitoring runs.DevOpsNo warnings★ 55.4K↓ —
- scvi-toolsK-Dense-AI/scientific-agent-skillsFits probabilistic models for single-cell omics, including scVI batch integration, scANVI annotation, totalVI CITE-seq, MultiVI RNA/ATAC integration, and posterior differential expression. Use for generative modeling, reference mapping, multimodal analysis, or model-based uncertainty; use scanpy for standard preprocessing and exploratory analysis.OtherNo warnings★ 55.4K↓ —
- research-lookupK-Dense-AI/scientific-agent-skillsCompiles current scholarly evidence for a scientific manuscript or research brief when the user explicitly asks to gather literature, references, background evidence, competing findings, or a manuscript research packet. Uses Parallel Search by default, Parallel Extract for source retrieval, Parallel Research for explicitly deep/exhaustive work, optional explicit Parallel Chat, and optional Perplexity only when requested or allowed as a failure fallback.ScienceNo warnings★ 55.4K↓ —
- diffdockK-Dense-AI/scientific-agent-skillsPredicts protein-small-molecule binding poses with DiffDock and DiffDock-L from PDB or sequence plus SMILES/SDF/MOL2. Covers batch docking, pose triage, confidence interpretation, and validation. Use for molecular docking and virtual-screening pose generation, not binding-affinity prediction.ScienceNo warnings★ 55.4K↓ —Also in 1 other repo
diffdock
K-Dense-AI/scientific-agent-skills
ScienceUpdated 5 days ago
From the author
Predicts protein-small-molecule binding poses with DiffDock and DiffDock-L from PDB or sequence plus SMILES/SDF/MOL2. Covers batch docking, pose triage, confidence interpretation, and validation. Use for molecular docking and virtual-screening pose generation, not binding-affinity prediction.
Install
npx skills add K-Dense-AI/scientific-agent-skills --skill diffdock -a claude-code
Installs to .claude/skills/diffdock/ · Each command fetches the skill straight from GitHub with the open skills CLI.
Download .zip
Byte-identical to the scanned commit, with the repository’s licence and a SOURCE.txt.
What it can touch
Runs bundled scriptsNo network use seenLicence: MIT
Safety checks on SKILL.md
- Ships scripts we have not reviewedLow
Why 89
Security85
Provenance95
Maintenance100
Licence100
Adoption73
Files (9)
- SKILL.md
- assets/batch_template.csv
- assets/custom_inference_config.yaml
- references/confidence_and_limitations.md
- references/parameters_reference.md
- references/workflows_examples.md
- scripts/analyze_results.py
- scripts/prepare_batch_csv.py
- scripts/setup_check.py