alterlab-aperta
From the author
Drives TÜBİTAK Açık Bilim Politikası (Open Science Policy) compliance and deposition into Aperta — TÜBİTAK ULAKBİM's national open archive at aperta.ulakbim.gov.tr — encoding its principles (İlke 1: deposit the accepted manuscript in Aperta on acceptance; İlke 2: open access at most 6 months after publication for STEM, 12 for SSH; İlke 6: document data that must stay closed, e.g. for KVKK; İlke 9: report compliance in the final report) and scaffolding the five-question TÜBİTAK Veri Yönetim Planı / VYP (data management plan) uploaded with ARDEB applications. Use when depositing to Aperta, complying with the TÜBİTAK açık bilim policy, preparing a TÜBİTAK data management plan (VYP), reporting open-access compliance in a final report, or documenting a justified data embargo. For Zenodo/Dryad/OSF and international DMPs prefer alterlab-open-science; for the KVKK lawful-basis/anonymisation plan prefer alterlab-kvkk-dmp. Part of the AlterLab Academic Skills suite.
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npx skills add AlterLab-IEU/AlterLab-Academic-Skills --skill alterlab-aperta -a claude-code
Installs to .claude/skills/alterlab-aperta/ · Each command fetches the skill straight from GitHub with the open skills CLI.
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- alterlab-open-scienceAlterLab-IEU/AlterLab-Academic-SkillsGuidance for open science practices — preregistration (OSF Registries, AsPredicted, PROSPERO, ClinicalTrials.gov), open data and FAIR principles, repository choice (Zenodo, Dryad, Figshare), open access routes (Green/Gold/Diamond), Creative Commons licensing, reproducible computational workflows (Docker, Binder, Code Ocean), registered reports, open peer review, and TOP Guidelines. Use when preregistering a study, writing the FAIR data-sharing and repository section of a grant data management plan (NSF, NIH, ERC, UKRI), choosing a data repository, navigating open access, or building reproducible analyses. For human-subjects ethics, IRB applications, informed consent, or GDPR/HIPAA compliance, defer to alterlab-research-ethics. Part of the AlterLab Academic Skills suite.Science★ 84
- alterlab-yok-akademikAlterLab-IEU/AlterLab-Academic-SkillsLooks up a Turkish academic's official YÖKSİS-backed profile, current affiliation, unvan (academic title), publications, research projects, and supervised theses on the YÖK Akademik portal (akademik.yok.gov.tr/AkademikArama/), a server-rendered JSP app with no public JSON API, by scraping its verified endpoints (AkademisyenArama POST search, viewAuthor.jsp profile, AkademisyenProjeBilgileri, AkademisyenYonTezBilgileri) keyed by an opaque authorId, with Turkish-character (Iı Şş Ğğ Çç Öö Üü) normalization for name matching. Use when the request is to verify a Turkish academic's current institution, find a researcher on YÖK Akademik, confirm affiliation for authorship or a recommendation letter, or list someone's supervised theses or projects. For admission statistics (kontenjan, taban puan) use alterlab-yokatlas; for the national thesis full-text archive use alterlab-yok-tez; for publication metadata enrichment use alterlab-openalex. Part of the AlterLab Academic Skills suite.Browser★ 84
- alterlab-research-ethicsAlterLab-IEU/AlterLab-Academic-SkillsInternational research ethics and compliance assistant supporting IRB/ethics board applications, informed consent drafting, data management plans, Belmont Report principles, Declaration of Helsinki (2024), GDPR compliance for research, HIPAA considerations, vulnerable populations protocols, deception research, confidentiality and anonymity, research integrity (fabrication/falsification/plagiarism), conflict of interest disclosure, and dual-use research oversight. Use when preparing an IRB or ethics board application, drafting informed consent, writing a data management plan, addressing GDPR/HIPAA in research, protecting human subjects or vulnerable populations, handling animal ethics, or disclosing conflicts of interest. For Turkey-specific etik kurul use alterlab-tr-research-ethics; for KVKK data plans alterlab-kvkk-dmp; for survey wording alterlab-survey-design; for qualitative methodology alterlab-qualitative-methods. Part of the AlterLab Academic Skills suite.Science★ 84
- alterlab-ai-use-disclosureAlterLab-IEU/AlterLab-Academic-SkillsHelps faculty and researchers disclose generative-AI use and comply with the rules for manuscripts, grant proposals, peer review, theses and figures. Walks a venue → policy → placement decision tree over policies verified on 2026-09-23 (ICMJE, Springer Nature/Nature, Elsevier, Wiley, Taylor & Francis, Sage, IEEE, PLOS, arXiv; NIH NOT-OD-25-132 and NOT-OD-23-149, NSF, UKRI, ERC, TÜBİTAK; YÖK's 2024 ethics guide; EU AI Act Article 50), drafts English and Turkish statements, and ships scripts/disclosure_builder.py to emit a statement plus warnings where a policy forbids the use. Use when the request mentions an AI or ChatGPT disclosure or declaration, whether and where AI use must be declared, AI in peer review or grant review, AI-generated figures, AI rules for a thesis, or 'yapay zekâ kullanım beyanı'. For course AI policies and APA/MLA citations of ChatGPT prefer alterlab-syllabus-ai-policy; for writing the paper itself prefer alterlab-scientific-writing. Part of the AlterLab Academic Skills suite.Science★ 84
- alterlab-preprint-depositionAlterLab-IEU/AlterLab-Academic-SkillsDrives preprint deposition across servers (arXiv, bioRxiv, medRxiv, ChemRxiv, SSRN, Research Square, OSF Preprints): picks the server by field, prepares submission metadata and arXiv categories, sets the license from each server's real option set (arXiv non-exclusive license or CC BY/BY-SA/BY-NC-SA/BY-NC-ND/CC0; bioRxiv/medRxiv CC variants or No-reuse) against funder mandates (NIH, NSF, Gates, Plan S), handles immutable versioning and preprint DOIs, checks a journal's preprint policy via the Jisc Open Policy Finder API (formerly Sherpa Romeo), and links the preprint to the published article. Reuses alterlab-arxiv and alterlab-biorxiv for metadata. Use when depositing a preprint, choosing a preprint server, preparing an arXiv, bioRxiv, or medRxiv submission, setting a preprint license, or checking journal preprint policy; for Zenodo/Dryad/Figshare data deposition prefer alterlab-open-science, for TÜBİTAK Aperta prefer alterlab-aperta. Part of the AlterLab Academic Skills suite.Science★ 84
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