mdanalysis-trajectory
From the author
Analyze MD trajectories from GROMACS, AMBER, NAMD, CHARMM, LAMMPS. Reads topology/trajectory into Universe objects; supports RMSD, RMSF, radius of gyration, contact maps, H-bonds, PCA, and custom distance/angle calculations. Use for post-simulation structural analysis; use OpenMM/GROMACS for running simulations.
Install
npx skills add jaechang-hits/SciAgent-Skills --skill mdanalysis-trajectory -a claude-code
Installs to .claude/skills/mdanalysis-trajectory/ · Each command fetches the skill straight from GitHub with the open skills CLI.
No download: this skill’s licence (GPL-2.0) does not let us redistribute its files. The install commands fetch them from GitHub instead.
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