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Run nf-core bioinformatics pipelines (rnaseq, sarek, atacseq) on sequencing data. Use when analyzing RNA-seq, WGS/WES, or ATAC-seq data—either local FASTQs or public datasets from GEO/SRA. Triggers on nf-core, Nextflow, FASTQ analysis, variant calling, gene expression, differential expression, GEO reanalysis, GSE/GSM/SRR accessions, or samplesheet creation.

Install

npx skills add anthropics/knowledge-work-plugins --skill nextflow-development -a claude-code

Installs to .claude/skills/nextflow-development/ · Each command fetches the skill straight from GitHub with the open skills CLI.

Download .zip

Byte-identical to the scanned commit, with the repository’s licence and a SOURCE.txt.

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Safety checks on SKILL.md

  • Pipes a download straight into a shellHigh
  • Uses sudoLow
  • Ships scripts we have not reviewedLow

Why 55

Security45
Provenance100
Maintenance100
Licence100
Adoption70

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