qiime2-amplicon
From the author
Processes paired-end 16S amplicon reads into QIIME 2 ASVs and taxonomy with retained artifact provenance. Checks paired FASTQ manifests, primer orientation diagnostics, predicted post-trimming overlap, sample IDs, runtime versions and read retention, and guides selection of compatible taxonomic classifiers.
Install
npx skills add K-Dense-AI/scientific-agent-skills --skill qiime2-amplicon -a claude-code
Installs to .claude/skills/qiime2-amplicon/ · Each command fetches the skill straight from GitHub with the open skills CLI.
Byte-identical to the scanned commit, with the repository’s licence and a SOURCE.txt.
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