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Builds, runs, and debugs Nextflow DSL2 pipelines and nf-core workflows. Use for Nextflow, nf-core, .nf files, nextflow.config, processes/channels/operators, samplesheets, nf-test, modules/subworkflows, container and executor configuration, HPC/SLURM or cloud deployment, and failed or resumed pipeline runs.

Install

npx skills add K-Dense-AI/scientific-agent-skills --skill nextflow -a claude-code

Installs to .claude/skills/nextflow/ · Each command fetches the skill straight from GitHub with the open skills CLI.

Download .zip

Byte-identical to the scanned commit, with the repository’s licence and a SOURCE.txt.

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Why 95

Security100
Provenance95
Maintenance100
Licence100
Adoption73

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