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This research investigates how tabular foundation models react to repeated measurements at identical inputs, revealing a counterintuitive phenomenon where additional data degrades predictions in other regions of the feature space. The study attributes this harm to protocol mismatches between IID pretraining assumptions and response function priors, as well as specific attention scaling dependencies on row counts in models like TabPFN-v3. Practical interventions such as averaging measurements or resetting internal counters are proposed to mitigate distortion while preserving useful predictive gains.
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When Repeated Measurements Hurt Tabular Foundation Models

arXiv2 min read

arXiv:2610.16801v1 Announce Type: cross Abstract: Tabular foundation models (TFMs) achieve state-of-the-art performance on IID benchmarks, but how do they respond to repeated measurements at the same inputs? Across six TFMs, synthetic and semi-synthetic experiments show that additional measurements can improve predictions at measured inputs while degrading them elsewhere. Harm is most frequent at low noise, and irrelevant features amplify it in several models; real repeated-measurement datasets show similar patterns. Statistically, the IID rule targeted by PFN pretraining treats each repeated input as fresh evidence about the input distribution. When the prior links this distribution to the response function, the resulting protocol mismatch can outweigh the benefit of additional measurements, even under exact inference. Computationally, interventions identify row-count dependence in TabPFN-v3's attention scaling as a contributor to harm. Resetting the count largely reverses distortion in a noiseless linear diagnostic and attenuates amplification by irrelevant features. Finally, we evaluate ways to retain the benefits of repeated measurements while limiting their harm. Averaging measurements usually outperforms supplying them separately at larger repetition counts, whereas count reset can suppress both harm and useful gains. Code, saved results and reproduction instructions are available at https://github.com/drizmiz/PFN-Repeated-Measurement-Supp

Abstract:Tabular foundation models (TFMs) achieve state-of-the-art performance on IID benchmarks, but how do they respond to repeated measurements at the same inputs? Across six TFMs, synthetic and semi-synthetic experiments show that additional measurements can improve predictions at measured inputs while degrading them elsewhere. Harm is most frequent at low noise, and irrelevant features amplify it in several models; real repeated-measurement datasets show similar patterns. Statistically, the IID rule targeted by PFN pretraining treats each repeated input as fresh evidence about the input distribution. When the prior links this distribution to the response function, the resulting protocol mismatch can outweigh the benefit of additional measurements, even under exact inference. Computationally, interventions identify row-count dependence in TabPFN-v3's attention scaling as a contributor to harm. Resetting the count largely reverses distortion in a noiseless linear diagnostic and attenuates amplification by irrelevant features. Finally, we evaluate ways to retain the benefits of repeated measurements while limiting their harm. Averaging measurements usually outperforms supplying them separately at larger repetition counts, whereas count reset can suppress both harm and useful gains. Code, saved results and reproduction instructions are available at this https URL

Machine Learning (stat.ML); Machine Learning (cs.LG)

arXiv:2610.16801 [stat.ML]

(or arXiv:2610.16801v1 [stat.ML] for this version)

https://doi.org/10.48550/arXiv.2610.16801 Focus to learn more arXiv-issued DOI via DataCite (pending registration)

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Full text under the publisher's open licence · 284 words

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