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This study exposes the pitfalls of inferring semantic meaning from SAE latents in EEG foundation models, demonstrating that perturbation sensitivity alone fails to validate feature interpretations without rigorous controls for signal removal and specificity. The authors introduce a "validation ladder" framework to systematically distinguish genuine functional representations from artifacts caused by broad spectral filtering, offering a critical methodological advance for interpreting sparse autoencoders in neural data.
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When Is an SAE Feature Interpretable? A Validation Ladder for EEG Foundation Models

arXiv3 min read

arXiv:2609.34091v1 Announce Type: new Abstract: Sparse autoencoders (SAEs) decompose dense model activations into discrete latents, making individual features easy to interpret--and easy to misinterpret. In EEG foundation models, this creates a tempting inference: if removing alpha-band activity strongly changes a latent's activation, one might conclude that the latent represents alpha activity. Across 27 settings spanning three backbones, three EEG datasets, and three network depths, this interpretation initially appears compelling: alpha removal changes latent firing 7.3 times more than an equal-width sham notch (95% CI [6.2, 8.7], bootstrapped over settings). However, the alpha filter also deletes far more signal than the sham. After normalizing by removed spectral energy, the ratio falls to 0.28 (95% CI [0.22, 0.36]) and exceeds one in none of the 27 settings. Latents selected for their response to alpha removal are, on clean EEG, slightly anti-correlated with relative alpha power (mean r = -0.073), giving no support for a simple alpha-detector reading. Motivated by this failure case, we propose a validation ladder for semantic interpretations of SAE latents: it asks in turn whether a latent responds, whether that response survives controlling for how much signal the intervention removes, whether it is specific rather than broadly fragile, and whether the proposed property is visible on unperturbed data--while separately testing the stronger claim that the latent matters to a task classifier. Perturbation sensitivity alone does not establish what an SAE latent represents.

Title:When Is an SAE Feature Interpretable? A Validation Ladder for EEG Foundation Models

Abstract:Sparse autoencoders (SAEs) decompose dense model activations into discrete latents, making individual features easy to interpret--and easy to misinterpret. In EEG foundation models, this creates a tempting inference: if removing alpha-band activity strongly changes a latent's activation, one might conclude that the latent represents alpha activity. Across 27 settings spanning three backbones, three EEG datasets, and three network depths, this interpretation initially appears compelling: alpha removal changes latent firing 7.3 times more than an equal-width sham notch (95% CI [6.2, 8.7], bootstrapped over settings). However, the alpha filter also deletes far more signal than the sham. After normalizing by removed spectral energy, the ratio falls to 0.28 (95% CI [0.22, 0.36]) and exceeds one in none of the 27 settings. Latents selected for their response to alpha removal are, on clean EEG, slightly anti-correlated with relative alpha power (mean r = -0.073), giving no support for a simple alpha-detector reading. Motivated by this failure case, we propose a validation ladder for semantic interpretations of SAE latents: it asks in turn whether a latent responds, whether that response survives controlling for how much signal the intervention removes, whether it is specific rather than broadly fragile, and whether the proposed property is visible on unperturbed data--while separately testing the stronger claim that the latent matters to a task classifier. Perturbation sensitivity alone does not establish what an SAE latent represents.

Machine Learning (cs.LG)

arXiv:2609.34091 [cs.LG]

(or arXiv:2609.34091v1 [cs.LG] for this version)

https://doi.org/10.48550/arXiv.2609.34091 Focus to learn more arXiv-issued DOI via DataCite (pending registration)

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