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This research introduces GP-SDE Matching, a simulation-free variational framework designed to improve Bayesian inference for continuous-time dynamics from noisy, irregular data. By analytically marginalizing sparse GP posteriors and incorporating actual observation times, the method achieves robust drift recovery and state reconstruction without relying on computationally expensive simulations. The approach demonstrates competitive performance against existing latent-SDE and state-space methods across multiple system identification benchmarks.
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Simulation-Free Learning of GP-SDEs from Irregular Observations

arXiv2 min read

arXiv:2609.33112v1 Announce Type: new Abstract: Gaussian process stochastic differential equations (GP-SDEs) provide a flexible Bayesian model for unknown continuous-time state dynamics with uncertainty quantification, but learning and inference from noisy and irregular observations remain computationally challenging. To address this issue, we propose GP-SDE Matching, a simulation-free variational framework for Bayesian GP drift learning and continuous-time state smoothing. We analytically marginalize the sparse GP posterior to derive a tractable drift-matching objective that accounts for both the posterior mean and uncertainty of the unknown drift. To handle irregular observations, we further introduce an irregular-time-aware variational state posterior that incorporates the actual observation times during both encoding and continuous-time marginal querying. Experiments on the stochastic Lorenz--63 system demonstrate substantially improved drift recovery and state reconstruction under irregular observations, while five system identification benchmarks show robust forecasting under increasing observation sparsity and competitive performance against existing latent-SDE and state-space methods.

Abstract:Gaussian process stochastic differential equations (GP-SDEs) provide a flexible Bayesian model for unknown continuous-time state dynamics with uncertainty quantification, but learning and inference from noisy and irregular observations remain computationally challenging. To address this issue, we propose GP-SDE Matching, a simulation-free variational framework for Bayesian GP drift learning and continuous-time state smoothing. We analytically marginalize the sparse GP posterior to derive a tractable drift-matching objective that accounts for both the posterior mean and uncertainty of the unknown drift. To handle irregular observations, we further introduce an irregular-time-aware variational state posterior that incorporates the actual observation times during both encoding and continuous-time marginal querying. Experiments on the stochastic Lorenz--63 system demonstrate substantially improved drift recovery and state reconstruction under irregular observations, while five system identification benchmarks show robust forecasting under increasing observation sparsity and competitive performance against existing latent-SDE and state-space methods.

Machine Learning (cs.LG); Signal Processing (eess.SP); Machine Learning (stat.ML)

arXiv:2609.33112 [cs.LG]

(or arXiv:2609.33112v1 [cs.LG] for this version)

https://doi.org/10.48550/arXiv.2609.33112 Focus to learn more arXiv-issued DOI via DataCite (pending registration)

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